Comments (5)
Can you post the sequence you used for this prediction? Does it work for other sequences? Does this issue still happen with the newest version of the notebook?
This error looks like only part of the notebook got executed (most importantly the first cell was never executed).
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ExoI_CLP
MGIQGLLQFIKEASEPIHVRKYKGQVVAVDTYCWLHKGAIACAEKLAKGEPTDRYVGFCM
KFVNMLLSHGIKPILVFDGCTLPSKKEVERSRRERRQANLLKGKQLLREGKVSEARECFT
RSINITHAMAHKVIKAARSQGVDCLVAPYEADAQLAYLNKAGIVQAIITEDSDLLAFGCK
KVILKMDQFGNGLEIDQARLGMCRQLGDVFTEEKFRYMCILSGCDYLSSLRGIGLAKACK
VLRLANNPDIVKVIKKIGHYLKMNITVPEDYINGFIRANNTFLYQLVFDPIKRKLIPLNA
YEDDVDPETLSYAGQYVDDSIALQIALGNKDINTFEQIDDYNPDTAMPAHSRSRSWDDKT
CQKSANVSSIWHRNYSPRPESGTVSDAPQLKENPSTVGVERVISTKGLNLPRKSSIVKRP
RSAELSEDDLLSQYSLSFTKKTKKNSSEGNKSLSFSEMFVPDLVNGPTNKKSVSTPPRTR
NKFATFLQRKNEESGAVVVPGTRSRFFCSSDSTDCVSNKVSIQPLDETAVTDKENNLHES
EYGDQEGKRLVDTDVARNSSDDIPNNHIPGDHIPDKATVFTDEESYSFESSKFTRTISPP
TLGTLRSCFSWSGGLGDFSRTPSPSPSTALQQFRRKSDSSTSLPENNMSDVSQLKSEESS
DDESHPLREGACSSQSQESGEFSLQSSNASKLSQCSSKDSDSEESDCNIKLLDSQSDQTS
KLCLSHFSKKDTPLRNKVPGLYKSSSADSLSTTKIKPLGPARASGLSKKPASIQKRKHHN
AENKPGLQIKLNELWKNFGFKKF
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I got Wnt10A model. I am running ExoI in new notebook now, reducing the no. of models to 2. I hope it works. Will let you know how it goes.
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NameError Traceback (most recent call last)
in ()
5 use_model = {}
6 if "model_params" not in dir(): model_params = {}
----> 7 for model_name in ["model_1","model_2","model_3","model_4","model_5"][:num_models]:
8 use_model[model_name] = True
9 if model_name not in model_params:
NameError: name 'num_models' is not defined
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It takes a few hours and runtime stops.
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