Name: Stephen Ogada
Type: User
Company: Jomo Kenyatta University of Agriculture & Technology
Bio: Interested in molecular biology, omics, bioinformatics, and data science.
Location: Nairobi, Kenya
Blog: https://sogada.github.io
Stephen Ogada's Projects
PhD toolbox course is meant to give you an introductory background in bioinformatics
GWAS course in Berlin
Conda recipes for the bioconda channel.
Course material for UBC Biol525D
Official git repository for Biopython (converted from CVS)
A basic introduction to Biopython, intended for a classroom based workshop
This repository tracks the spread of the novel coronavirus, also known as SARS-CoV-2. It is a contagious respiratory virus that first started in Wuhan in December 2019. On 2/11/2020, the disease is officially named COVID-19 by the World Health Organization.
All input and output files used for simulations and for MSMC and fastsimcoal2
This Snakemake pipeline implements the GATK best-practices workflow
This is the first attempt in 2017.7, Kunming CAS
Pipeline for RRBS data analysis without a reference genome
Genomic data interpretation and visualization Workshop
Transcripts annotation and GO enrichment Fisher tests
GWAS
GWAS Pipeline for H3Africa
Code for Chapter 19 - A Step-By-Step Tutorial On How To Build A Machine Learning Model
Introductions to high throughput/performance and cloud computing
Specifications of SAM/BAM and related high-throughput sequencing file formats
Introduction to RNA-seq using HPC