A suggestion to use #!/usr/bin/env python instead of #!/usr/bin/python about midas HOT 4 CLOSED

Good point - I'll think about doing this and updating the documentation (since users would need to use python run_phylo_cnv.py versus just run_phylo_cnv.py).

Also, did you run into an error when running run_phylo_cnv.py with the old version of python? If so, what is that version?

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Actually, never mind about needing to update the documentation. Users would still be able to use run_phylo_cnv.py

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The default version of python in our HPC is 2.6.6. I never try to run PhyloCNV using this old version of python, since I need to install all the other packages, which I am not sure will be successful or not. And python 2.7 works fine.

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I've followed your recommendation and am now using #!/usr/bin/env python

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