Related Issues (20)
- document ChildIOException
- wrong python path is used when running python script with named conda environment
- False detection of formatting issues. HOT 1
- remove --cluster from v8.x
- Customize location of `.snakemake` directory
- --singularity-args quotes not propagated to cluster job script HOT 1
- archive cli docs inconsistent with code
- Ensure stable conda environments via pixi lockfile support
- nested for loop in f-string
- --quiet settings not intuitive HOT 1
- Progress report when downloading from storage provider HOT 3
- install error HOT 1
- install snakemake using `pip install git+https://github.com/snakemake/snakemake` HOT 2
- Snakemake Pipeline Issue
- snakemake --export-cwl doesn't actually export CWL
- Stop workflow (without error) if an output file is empty HOT 1
- Allow child rule to inherit localrule tag
- More descriptive error message for AmbiguousRuleException and update Documentation: Ruleorder
- Module conflicts in workflows with a diamond-shape file structure
- --jobs does not consider --local-cores when executing localrules
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