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Chao Du's Projects

bio_tools icon bio_tools

These are the tools that I built specifically for my study of QL109.Hope these codes can be easily

blastgui icon blastgui

A Python-based Cross-platform Local Blast Visualization Software

img_scripts icon img_scripts

As a learning process, this is a small tool set that I used for image analysis.

oleveler icon oleveler

This is mirror repository of https://gitlab.services.universiteitleiden.nl/duc/oleveler

primer-way icon primer-way

Overlapped primer design for entire coding sequence of the gene with specificity check

scanlapseplot icon scanlapseplot

From time-lapse scanned pictures to plots. Measure the greyness of selected area. Require ImageJ (or anything that can do the job) to mark target areas.

tidy-ncbi-genome-download icon tidy-ncbi-genome-download

Collect and filter genomes downloaded using [ncbi-genome-downloa](https://github.com/kblin/ncbi-genome-download), change file names to safe names for down-stream processing (phylogenetic tree making etc.)

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