Name: Chao Du
Type: User
Company: Leiden University
Bio: Researcher | Systems biology | Proteomics | Bioinformatician | Education and research technician | Faculty of Science
Twitter: snail123815
Location: Leiden, the Netherlands
Blog: https://orcid.org/0000-0003-3447-5293
Chao Du's Projects
For common SLURM scripts (templates) written for ALICE
These are the tools that I built specifically for my study of QL109.Hope these codes can be easily
A Python-based Cross-platform Local Blast Visualization Software
Modify to let it process pseudo genes (with translation)
As a learning process, this is a small tool set that I used for image analysis.
Docker for MetaboAnalyst 4.0
This is mirror repository of https://gitlab.services.universiteitleiden.nl/duc/oleveler
Overlapped primer design for entire coding sequence of the gene with specificity check
From time-lapse scanned pictures to plots. Measure the greyness of selected area. Require ImageJ (or anything that can do the job) to mark target areas.
Collect and filter genomes downloaded using [ncbi-genome-downloa](https://github.com/kblin/ncbi-genome-download), change file names to safe names for down-stream processing (phylogenetic tree making etc.)