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abc

ABC: System for Sequential Logic Synthesis and Formal Verification

acat

Assistive Context-Aware Toolkit

amdgpu-utils

A set of utilities for monitoring and customizing GPU performance

apibaso

Automatically exported from code.google.com/p/apibaso

augustus

Genome annotation with AUGUSTUS

ball

The Biochemical Algorithms Library

bedtools2

bedtools - the swiss army knife for genome arithmetic

bioconda-recipes

Conda recipes for the bioconda channel.

bioperl-live

Core BioPerl 1.x code

biopython

Official git repository for Biopython (converted from CVS)

biotoolsconnect

Adaptors for content exchange between bio.tools and community projects.

bmx6

BMX6 Mesh Networking Protocol

boinc

Open-source software for volunteer computing and grid computing.

boinc-app-eah-brp

BOINC Einstein@Home Binary Radio Pulsar search adapted for Debian Linux

bowtie

An ultrafast memory-efficient short read aligner

braker

BRAKER is a pipeline for fully automated prediction of protein coding genes with GeneMark-ES/ET and AUGUSTUS in novel eukaryotic genomes

bx-python

Tools for manipulating biological data, particularly multiple sequence alignments

catfishq

Cat FASTQ files

cgdsr

R-Based API for accessing the MSKCC Cancer Genomics Data Server (CGDS)

chefcookbook

Attempt to spawn bits from AWS

cloudcluster

common-workflow-language

Repository for CWL Specfications

content

Experimental repo of bio.tools content for augmentation with other sources of tool information

coordgenlibs

Schrodinger-developed 2D Coordinate Generation

cutandrun

Analysis pipeline for CUT&RUN and CUT&TAG experiments that includes QC, support for spike-ins, IgG controls, peak calling and downstream analysis.

cutesv

Long read based human genomic structural variation detection with cuteSV

cwltool

Common Workflow Language reference implementation

cyvcf2

cython + htslib == fast VCF and BCF processing

dbus-mqtt

Venus OS service mapping the D-Bus on Venus OS to MQTT

debian-med-links-analysis

A python notebook to keep track of the cross-linking between bio.tools and EDAM