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Seqscope codes
Single cell RNA-seq preprocessing tool for gene-by-cell matrices of UMI counts. It is recommended to use the raw spliced and unpliced counts matrices produced by scKB pipeline as the input of copilot.
R package for detecting doublets in single-cell RNA sequencing data
quality filtering tool for long reads
A package for population structure inference from RAD-seq data
finshingTool
Unix, R and python tools for genomics and data science
(check out instaGRAAL for a faster, updated program!) This program is from Marie-Nelly et al., Nature Communications, 2014 (High-quality genome assembly using chromosomal contact data), also Marie-Nelly et al., 2013, PhD thesis (https://www.theses.fr/2013PA066714)
Performs haplotype assembly from genomic DNA sequence reads for a single individual using a maximum-likelihood based approach. Performs well on diverse NGS technologies, including long read data and Hi-C.
software tools for haplotype assembly from sequence data
Chromosome-length haplotype inference using genotype data of single gamete cells
GUI-based pipeline for Hi-C data processing and visualization
A (very) simple script to QC Hi-C data.
Simple library/pipeline to generate and handle Hi-C data.
Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).
Large genome reassembly based on Hi-C data, continuation of GRAAL
A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats
Color palette package in R inspired by works at the Metropolitan Museum of Art in New York
Ploidy agnostic phasing pipeline and algorithm
The repository for code and data analysis pipeline for multi-omics (ATAC-seq, RNA-seq, lipidomics, genomes) integration and analysis for diapause evolution.
PacBio Assembly Tool Suite: Reads in ⇨ Assembly out
PacBio Secondary Analysis Tools on Bioconda
Improved Phased Assembler
A robust DE test method that accounts for the uncertainty in pseudotime inference
The RepeatScout 1.0.5, written by Pevzner et al., source code for browsing. The official release and more information are available at http://bix.ucsd.edu/repeatscout/
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.