Name: Pawel Krawczyk
Type: User
Company: International Institute of Molecular and Cell BIology
Bio: I am interested in the analysis of all kinds of NGS data, from metagenomics and bacterial genomics, to transcriptomics, TAILseq and long-read sequencing data
Location: Warsaw, Poland
Pawel Krawczyk's Projects
a toolkit for working with Oxford nanopore data
aka "Bayesian Methods for Hackers": An introduction to Bayesian methods + probabilistic programming with a computation/understanding-first, mathematics-second point of view. All in pure Python ;)
Various scripts for use in raceseq analysis
various scripts used in routine bioinfo work
high throughput screening analysis package
An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.
Software for measuring poly(A) tail length and 3′-end modifications using a high-throughput sequencer
Technology agnostic long read analysis pipeline for transcriptomes
Theano is a Python library that allows you to define, optimize, and evaluate mathematical expressions involving multi-dimensional arrays efficiently. It can use GPUs and perform efficient symbolic differentiation.