SlicerJupyter documentation on functions. about slicerjupyter HOT 4 CLOSED

Do you segment a 2D image or a 3D volume?

You can find many examples of saving/loading/manipulating segmentations in Python in the script repository.

from slicerjupyter.

You can access voxels of a volume as a numpy array using slicer.util.arrayFromVolume and then slice it and write it to any image file format. You can also use VTK and SimpleITK functions to slice volumes and write to file.

from slicerjupyter.

Thanks! Our goal is to do both 3D and 2D.

from slicerjupyter.

You can now also use display(filename='MatplotlibExample.png', type="image/png", binary=True) to display an image as a result of a cell execution.

from slicerjupyter.