Comments (2)
SionBayliss
commented on July 16, 2024
This seems to be an issue with a recently updated dependency, namely bioperl.
I will get that corrected on the conda recipe, but in the mean time you can downgrade bioperl using:
conda install perl-bioperl==1.7.2
I have tested this and it should fix your issue.
I will leave this open until I have fixed the conda recipe. I am unavailable for ~1 week but should have it fixed on my return in mid-March.
All the best,
Sion
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salrodpal
commented on July 16, 2024
I have fixed with your recommendation.
Thank you!!
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Related Issues (20)
- Confused with terminology/output HOT 1
- extract_feature_sequences.pl failed HOT 2
- error observed during "aligning all feature sequences" HOT 2
- Missing genome in output HOT 12
- Output gene sequences to run gene alignment separately HOT 4
- PIRATE_plots.pdf created by plot_summary.R HOT 1
- Error after MCL clustering step HOT 5
- How do you tell which gene families are single-copy or multi-copy? HOT 2
- Feature request: Option to include original IDs and annotations in fasta headers for align_features_sequences script HOT 2
- Average_dose =1 is appropriate to determine whether a gene family is a single copy？ HOT 1
- - ERROR: link_clusters.pl failed. HOT 1
- Error when running PIRATE MCL process
- For some single loci, a gene family but for others not. HOT 1
- problem in installation HOT 9
- Bump version in new release HOT 4
- Missing output files and coregenom files HOT 3
- Running on large dataset HOT 2
- stuck at threshold 60 during MCL clustering HOT 3
- PIRATE.pangenome_summary.txt HOT 6
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