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2ndgs_pipelines

Perl 5 and R source codes for next generation (the second generation) sequencing data analysis by integrating lots of open-source softwares.

again

alzheimers_parkinsons

Collaboration with Montine, Chang, and Montgomery labs on Alzheimers / Parkinson's ATAC-seq analysis

aneuploidy_scrnaseq

Detection of aneuploidy using scRNA-seq data from human embryos.

atlas

bismark

A tool to map bisulfite converted sequence reads and determine cytosine methylation states

coding-interview-university

A complete computer science study plan to become a software engineer.

conquer

consistent quantification of external RNA-seq data sets

deeplearning.ai-notes

吴恩达《深度学习》学习笔记(xmind)、作业代码、代码视频讲解

devomicsdataprocessing

Devomics

embryotimecourse2018

Data and analysis scripts for our Embryo Timecourse paper.

hello-world

just a new repository

hmmcopy_utils

Tools for extracting read counts and gc and mappability statistics in preparation for running HMMCopy.

human_embryo_licat

learning

mpal-single-cell-2019

Publication Page for MPAL Paper 2019

once-again

to confirm this process

pandas_exercises

Practice your pandas skills!

pipidabs

PipiDABS: A Comprehensive and User-Friendly Pipeline for Downstream DNA Methylation Analysis of High-throughput Bisulfite Sequencing Data.

placenta_epigenome

post_implantation

rna_v2

A revised pipeline for RNA seq pipeline

scell_lung_adenocarcinoma

This is the repository that contains the analysis of the lung adenocarcinoma single cell dataset

scnmt-seq

single-cell Nucleosome Methylation Transcription

scnmt_gastrulation

scNMT-seq gastrulation

scnomere-seq

single-cell nucleosome occupancy, methylome and RNA expression sequencing

scrna.seq.course

Analysis of single cell RNA-seq data course

scrna_smart_seq2

scrnaseqpipeline

single-cell-transcriptomics-reveals-a-signaling-roadmap-coordinating-endoderm-and-mesoderm-lineage

Code and Data Availability for Single cell transcriptomics reveals a signaling roadmap coordinating endoderm and mesoderm lineage diversification during foregut organogenesis