Comments (2)
pbellec
commented on September 6, 2024
hi Yang,
The problem I found in the config was not with NIAK, but with the MINC quarantine, and more specifically in the sh script we're sourcing to configure the tool. Would it be possible by any chance that you made a local copy of the quarantine or the config script ?
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dyt811
commented on September 6, 2024
Thanks a lot! Yup. That fixed everything. I just fixed .bashrc to source the quarntain folder and so far it is happily chugging along the tasks and all T1 preprocessing part are going through fine. 👯
I will give a more thorough report when everything finishes.
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Related Issues (20)
- user can't download niak because it is too big HOT 3
- Errors running NIAK pre-processing pipeline HOT 15
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- regress_confounds failure HOT 6
- verbose broken in `niak_brick_regress_confounds`
- missing parameter `nb_vol_min` in the doc of `niak_brick_regress_confounds`
- most of octave svds tests fails ( niak-cog docker) HOT 3
- running NIAK singularity with slurm system HOT 3
- crash using compcor
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- NIAK throws an error saying it can't find an image but still tries to preprocess image
- if the fieldname of files_in structure is too long psom throws an error saying the structure does not exist HOT 1
- niak clogs /tmp and kills the OS HOT 4
- test that niak does not leave files in the tmp HOT 1
- better bids-app and boutique support
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