Segmentation fault about vcf2tsvpy HOT 1 CLOSED

Hey,

Thanks for using the tool :-)

First:
I have just updated the tool (and even renamed it to vcf2tsvpy), so I would appreciate if you could install the latest Conda-based version. Here, you use the tool as follows:

vcf2tsvpy --input_vcf <example.vcf.gz> --out_tsv <example.tsv>

The command you indicate above (python3 vcf2tsvpy ..) stems back to an old version of the tool.

Once you have installed the tool succesfully, I would also recommend that you, prior to running vcf2tsvpy, compress and index your input VCF (myhg38.hg38_multianno.vcf) with bgzip + tabix.

It might be that the cause of your error comes from errors in the input VCF, but I recommend you try the above first, and see what that gives you.

cheers,
Sigve

from vcf2tsvpy.