sickle-in-africa Goto Github PK

repos: 26.0 gists: 0.0

Name: Sickle In Africa

Type: Organization

Bio: Research in Sickle Cell Disease, and the translation into healthcare

Twitter: SickleInAfrica

Blog: https://www.sickleinafrica.org/

Sickle In Africa's Projects

bde.big-data-genmics-jax

Big data genomics for professors from Jackson Laboratory, Maine USA

bde.git-novice

An introduction to version control for novices using Git.

bde.intro-epidemiology

An introduction to epidemology

bde.notes-for-instructors

notes for instructors intending to teach an iteration of the big data epidemiology course

bde.python-novice-inflammation

This lesson teaches novice programmers to write modular code to perform data analysis using Python.

bde.r-novice-inflammation

The goal of this lesson is to teach novice programmers to write modular code to perform a data analysis.

bde.shell-novice

An introduction to the Unix shell for people who have never used the command line before.

bde.sql-novice-survey

An introduction to databases and SQL using Antarctic survey data.

big-data-epidemiology

a course in big data epidemiology for sickle in africa

container-builds

the build contexts of all containers used in the sickleinafrica workflows

data-and-statistics-resources

a repository of educational material for data science

data-harmonisation

a program to automate the harmonisation of different registry-based data sets. **In loving memory of Professor Gaston Mazandu**.

dockerfiles

a repository of docker files for the sickleinafrica docker containers

gwas-lite

a lite GWAS workflow for training purposes

h3agwas

GWAS Pipeline for H3Africa.

ontology-matching

match data elements from research site codebooks to ontology terms

outcome-of-hydroxyurea-use

R scripts for the Frontiers publication *Outcome of Hydroxyurea Use in SCD and Evaluation of Patients’ Perception and Experience in Nigeria*

saw.helpful-tools

a jumbled repository of small scripts for small tasks we find difficult to automate

saw.sarek

a whole genome sequence variant calling pipeline for human cohorts

saw.snv-indel

A variant calling pipeline for human genetics focusing on germline SNVs and small indels

saw.structural-variants

A workflow for discovery of large structural variants in whole human genome sequences

sequence-analysis-pipelines

a library of sequence analysis pipelines for human genomic medicine

sequence-analysis-workflows

A library of curated workflows for sequence analysis on high performance computer servers by SickleInAfrica

sequence-simulator

simulate read sets for genomic sequences, to be used with the sequence-analysis-pipelines workflows

sia-database-workshop

a repository for the December 2021 database workshop

welcome-to-sia-github

A welcome site that outlines terms of use, available resources and some simple how-tos

sickle-in-africa Goto Github PK

Sickle In Africa's Projects

Recommend Projects

Recommend Topics

Recommend Org