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aot2d

biopython

Official git repository for Biopython (originally converted from CVS)

drugui

Druggability Suite

enm_package

hidef

A package for building a hierarchy based on multiple partitions on graph nodes.

intermolecular

mdtoolbox

MDToolbox: A MATLAB/Octave toolbox for statistical analysis of molecular dynamics trajectories

mdtraj

An open library for the analysis of molecular dynamics trajectories

msm_we

numpy

Numpy main repository

odld-we

permeability-floe-data

Input molecule records for the OpenEye Permeabillity Floe and example output trajectory files

prody

A Python Package for Protein Dynamics Analysis

prody-website

ProDy Website

ptempest

Automatically exported from code.google.com/p/ptempest

rhapsody

Python program, based on Prody, for pathogenicity prediction of human missense variants

shields

Concise, consistent, and legible badges in SVG and raster format

skeet-shooting

A simple 2D skeet shooting game.

stawdewvalley

Decompiled Stardew Valley source code

straw

Extract data quickly from Juicebox via straw

syncorko

Synchronizes files using rclone.

tadbit

TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FASTQ files to obtain raw interaction binned matrices (Hi-C like matrices), normalize and correct interaction matrices, identify and compare the so-called Topologically Associating Domains (TADs), build 3D models from the interaction matrices, and finally, extract structural properties from the models. TADbit is complemented by TADkit for visualizing 3D models

tensorflow

Computation using data flow graphs for scalable machine learning

user_submitted_scripts

Example scripts for WESTPA submitted by users

westpa

WESTPA: The Weighted Ensemble Simulation Toolkit with Parallelization and Analysis

westpa2_tutorials

Tutorials and additional documentation for the WESTPA 2.0. (For future LiveCoMS Tutorial Paper)

westpa_tutorials

Tutorials and additional documentation for the WESTPA suite

zinba

Automatically exported from code.google.com/p/zinba