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aider-fork

aider is AI pair programming in your terminal

alphafold

Open source code for AlphaFold.

alzheimers_parkinsons

Collaboration with Montine, Chang, and Montgomery labs on Alzheimers / Parkinson's ATAC-seq analysis

autoawq

AutoAWQ implements the AWQ algorithm for 4-bit quantization with a 2x speedup during inference. Documentation:

autogen

A programming framework for agentic AI. Discord: https://aka.ms/autogen-dc. Roadmap: https://aka.ms/autogen-roadmap

autogpt-fork

AutoGPT is the vision of accessible AI for everyone, to use and to build on. Our mission is to provide the tools, so that you can focus on what matters.

chainlit

Build Conversational AI in minutes ⚡️

continue-fork

⏩ Open-source VS Code and JetBrains extensions that enable you to easily create your own modular AI software development system

custom_websearch_agent

Custom Websearch Agent Built with Local Models, vLLM, and OpenAI

deep-resp-forest

deepexplain

A unified framework of perturbation and gradient-based attribution methods for Deep Neural Networks interpretability. DeepExplain also includes support for Shapley Values sampling. (ICLR 2018)

drvae

Drug Response Variational Autoencoder

excelerate-scrnaseq

Single RNA-seq data analysis with R (Finland, May, 2019)

fastp

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

functionary

Chat language model that can use tools and interpret the results

graphtools

Tools for building and manipulating graphs in Python. Forked to make up to date with sklearn versions 1.0.2 and onward which removed the sklearn.utils.graph.graph_shortest_path and replace it with scipy.sparse.csgraph.shortest_path as sklearn recommends

intro-to-chipseq

Intro to ChIPseq using HPC

itsimple

The Official itSIMPLE Project

jidoujisho

A full-featured immersion language learning suite for mobile.

langchain-fork

🦜🔗 Build context-aware reasoning applications

llama.cpp

LLM inference in C/C++

lm-format-enforcer

Enforce the output format (JSON Schema, Regex etc) of a language model

loomr

An R-based interface for loom files

loyal-elephie

This project combines the power of a neat Next.js web UI and a mighty Python backend, leveraging the latest advancements in LLM and RAG to deliver a seamless and meaningful chatting experience! OpenAI compatible API is supported.

openai-python

The official Python library for the OpenAI API

outlines-fork

Structured Text Generation

pubmed-batch-download

Batch download articles based on PMID (Pubmed ID)

pubmedpdf

Automatically fetch PDFs from terminal using a pubmed ID or search term (pubmed style)

pytorchtutorial

PyTorch Tutorials from my YouTube channel

salmonte

SalmonTE is an ultra-Fast and Scalable Quantification Pipeline of Transpose Element (TE) Abundances