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Shintaro Minami's Projects

gcndesign icon gcndesign

Neural network model for prediction of amino-acid sequence from a protein backbone structure

invariant-point-attention icon invariant-point-attention

Implementation of Invariant Point Attention, used for coordinate refinement in the structure module of Alphafold2, as a standalone Pytorch module

mican icon mican

Non-sequential structural alignment program for protein structure

pdb-tools icon pdb-tools

A dependency-free cross-platform swiss army knife for PDB files.

pdbbasic icon pdbbasic

Basic Utilities for Protein Structure Data

pdbutil icon pdbutil

A simple module for handling protein backbone coordinates.

pydssp icon pydssp

A simplified implementation of DSSP algorithm for PyTorch and NumPy

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