Comments (3)
Thanks for the bug report. I just tried your exact commands and it ran to completion on my computer. Could you give me a little more info? Maybe post the return of sessionInfo()
so we can narrow down OS, R version and package version. And tempdir()
to see if temp is where it should be?
This sounds similar to Issue #5 and so might be fixed by starting R with TMPDIR=/path/to/tmp R
then running commands as usual.
from taxonomizr.
Thank you for your response.
Changing the temp directory worked.
from taxonomizr.
Great. Thanks for letting me know. Good luck with your research.
from taxonomizr.
Related Issues (20)
- FR: set a variable with default path for the databases HOT 5
- read.names.sql for common names HOT 2
- Assignment of taxonomy to blast hits HOT 1
- error: no such column: tmp.query.accession HOT 1
- Manual preparation of database HOT 1
- Error in preparing accessionTaxa.sql with prepareDatabase() HOT 10
- Get all bacterial species HOT 2
- Questions for the issue of taxonomizr package being terminated during operation HOT 1
- Error: disk I/O error In addition: Warning message: Couldn't set synchronous mode: disk I/O error HOT 5
- accessionToTaxa returns a single NA when the input contains too many accession ID HOT 3
- Error in downloading database using prepareDatabase HOT 9
- prepareDatabase('accessionTaxa.sql') downloading names and nodes with getnamesandnodes() error: HOT 9
- Error:database is locked with prepareDatabase HOT 3
- Cannot get taxonomizr to work HOT 4
- Pointing R to an already prepared database HOT 4
- Unable to query SQL database when built with `getAccessions=FALSE` HOT 2
- Does this tool do LCA? HOT 1
- Exclude species with no rank HOT 1
- error in prepareDatabase HOT 3
- Error in prepareDatabase('accessionTaxa.sql'), change in url? HOT 3
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from taxonomizr.