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Sherine 's Projects

associationanalysis icon associationanalysis

Rare variants association analysis tests is not only burden test. There are lots of test we can use.

bulkrnaseq icon bulkrnaseq

Snakemake workflow for Bulk RNASeq at both genome level and transcripts level.

downsampling icon downsampling

Different strategies for Downsampling: Downsampling is not just throwing a read

gala icon gala

Galactic and gravitational dynamics in Python

genesetenrichment icon genesetenrichment

Snakemake pipeline for Gene Set Enrichment: pathway and GO enrichment analysis

khmer icon khmer

In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more

kinship icon kinship

Quick analysis for kinship, relatedness, IBS, IBD

literate-resting icon literate-resting

Scripts and code for development of literate testing with reST-based shell tutorials.

lncrna icon lncrna

Snakemake pipeline to detect novel lncRNA

magnifier icon magnifier

Troubleshooting Pipeline: Investigates samples for any possible issue

mirna icon mirna

Snakemake pipeline to detect miRNA

ribofilio icon ribofilio

Ribofilio is a python tool to estimate ribosomes drop off rate.

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