shawnwx2019 Goto Github PK

bioinf2019

cheatmapshiny

A shiny app for simple heatmap based on ComplexHeatmap

cheatmapshinyfun

Function for CHeatmap shiny app

cottonheterosis

R code for cotton heterosis analysis project

emmax-pipeline

GWAS analysis process based on EMMAX software

f-box

Data processing of Arabidopsis thaliana F-box pseudotargeted metabolomics

filejoinshiny

A ShinyApp for file join by dplyr

flavonoid_gh_ga

post-doc prj. mGWAS cotton

gh-proxy

github release、archive以及项目文件的加速项目

gh_circrnaseq

Analysis and visualization R scripts of my research 「Genome-wide profiling of circular RNAs during the hybridization of two elite inbred lines of Gossypium hirsutum

hpc_tidymass

Pipeline for processing large scale untargeted metabolomics data using Tidymass on Ubuntu 20.04 server.

imotoolkits

Interactive multi-omics toolkits

mdatoolkits

Different analysis for metabolic data

mdatoolkits-interactive

Shiny app for MDAtoolkits

metminer

MetMiner: An integrated pipeline for large-scale screening of regulators in plant metabolism

metminer-cookbook

cookbook for MetMiner

mybioscript

Commonly used scripts

orgdb-critm1v1

orgDb package for Gossypium hirsutum based on CRI-TM1-v1

p.sibiricum_code

Analysis code for P.sibiricum paper

pck_db

plant compound kegg database.

pdatoolkits

Proteomics data downstream analysis

pic.room

Blog img storage

plantcyc_ms1_db

for LC-MS MS1 database from plantcyc

shawnwx2019.github.io

My blog

shellcrash

RM

single_cell_muti_omics

R code for research paper: A cell-sorting based nano-scale pipeline for cell type-specific multi-omics in plants

tidymass

tidymass

topgo-gh.tm1-criv1

topGO background for Gh.TM1-CRIv1, for GO DAG plot drawing.

untargeted_metabolomics_ath_sagl1

Data analysis

webservice-clients

A collection of Web Service Clients to consume EBI's tools via REST and SOAP APIs.