Comments (3)
beardymcjohnface
commented on June 27, 2024
Was this the conda build for Hecatomb, or when you pulled it from github?
The conda build will specify up to date versions of snakemake and mamba. I'm not sure how updating conda helped but it is also a good idea to keep conda up to date.
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Leran10
commented on June 27, 2024
Hi Michael,
Thanks for reply!
I think this issue happened when I installed hecatomb from GitHub, not via conda. Since my own Conda was not up to date, so that caused the issue. It might be helpful to remind users of this when they want to try the GitHub installation.
Leran
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beardymcjohnface
commented on June 27, 2024
That's good to know. The GitHub install is only intended for development purposes and we want to steer users away from manually installing from GitHub.
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Related Issues (20)
- I want to create a web app for hecatomb. HOT 1
- HPC database installation problems HOT 31
- HPC Execution problem when changing to V.1.1.0 HOT 4
- Skip host removal HOT 1
- Solving OSerror Issues in a WSL Environment during the megahit step. HOT 2
- Can Hecatomb be used for searching not only viruses but also bacteria, fungi, and mycoplasma? HOT 1
- bigtable.tsv column question HOT 1
- Filtering out host (human) genome beforehand? HOT 3
- No rule to produce assembly HOT 5
- add-host is failing on mask_host HOT 3
- out-of-memory error during population_assembly.flye, STAGE: repeat HOT 2
- 98, 99% Failure Issue HOT 1
- ModuleNotFoundError: No module named 'attrmap' HOT 1
- Errors in newest version 1.3.0 HOT 15
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- hecatomb combine not working HOT 3
- hecatomb.config.yaml HOT 1
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- ERROR: Snakemake failed HOT 4
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