Sara JC Gosline's Projects
This study measures the impact single drugs and combinations of drugs in vitro.
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
CoMEt: A Statistical Approach to Identify Combinations of Mutually Exclusive Alterations in Cancer
Common compute resources for Sage data scientists
Landscape of Dermal NF
Pipeline for initial analysis of droplet-based single-cell RNA-seq data
R package EloML: Elo rating system for machine learning models
Current workspace for development of drug efficacy prediction based on omic data
TF-DNA interaction prediction using chromatin accessibility files. This repo has now been moved to part of the larger garnet+forest package.
Validation and processing of GENIE files: https://www.synapse.org/genie
Hierarchical HotNet is an algorithm for finding hierarchies of active subnetworks.
Basic implementation of community detection in networks
:microscope: Somatic workflow for Kids-First
Implementation of the Leiden algorithm for various quality functions to be used with igraph in Python.
Implementation of the Louvain algorithm for community detection with various methods for use with igraph in python.
Documents required for the MANA 2023 metabolomics integration workshop.
MPNST Xenograft Modeling Framework
custom wrappers of frequently used R code
Neurofibromatosis EXperiment Unification Site
Prize-Collecting Steiner Forests for Interactomes
An Emacs major mode for OpenAPI 3 and Swagger 2 YAML files.
Flexible and powerful data analysis / manipulation library for Python, providing labeled data structures similar to R data.frame objects, statistical functions, and much more
A fast implementation of the Goemans-Williamson scheme for the prize-collecting Steiner tree / forest problem.