Comments (6)
@2017john, HDF5 datasets can be recreated with scripts/Organize datasets.ipynb notebook.
Nevertheless, I have uploaded all the datasets here.
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@seva100 Thank you.
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Hey @seva100 I am facing a similar issue in this particular line
h5f = h5py.File("../data/hdf5_datasets/all_data.hdf5", "r+")
I cant find this particular dataset at all. not even in the folder you mentioned.
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@Geeks-Sid all_data.hdf5
is just a union of all data sets from the folder I mentioned.
For example, if you need DRIONS-DB data, you can just replace it with DRIONS-DB.hdf5
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@seva100 Hey, Can you explain how to create a union of all the datasets?
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@Geeks-Sid you can just copy items from all the datasets by something like this:
import h5py
h5f_in = h5py.File("DRIONS-DB.hdf5", "r")
h5f_out = h5py.File("all_data.hdf5", "w")
h5f_out['DRIONS-DB/orig/images'] = h5f_in['DRIONS-DB/orig/images']
... # copy all other items
h5f_in.close()
h5f_out.close()
Or you can recreate it with scripts/Organize datasets.ipynb notebook.
But I think you won't really need a union of all the datasets for the sake of replication.
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Related Issues (16)
- Pre-processing HOT 4
- Failure in segmenting OD from DRIONS DB HOT 1
- what version of keras and tf did you use please? HOT 3
- RuntimeError: `get_session` is not available when using TensorFlow 2.0. HOT 3
- How do I use the pre-trained model to run on my own Images. HOT 6
- Not an issue but a question. (Joint optic cup disc hdf5) HOT 1
- Just a question, I am using your method to detect glaucoma, which needs calculating CDR value HOT 1
- hey can you help me if i only want to test only in single input image? HOT 1
- one question
- sir h5f = h5py.File(os.path.join(os.path.dirname(os.getcwd()), 'data', 'hdf5_datasets', 'all_data.hdf5'), 'r+') for this how to create HDF5 file . I am unable to create. HOT 4
- Unable to replicate HOT 2
- This is only segmenting the cup HOT 1
- Hdf5 HOT 1
- Problem in Hdf5 creation HOT 1
- Crop dataset by optic disc? HOT 13
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