Comments (3)
ramonski
commented on July 17, 2024
Also happens on reinstallation over the portal_quickinstaller tool:
Traceback (innermost last):
Module ZPublisher.Publish, line 138, in publish
Module ZPublisher.mapply, line 77, in mapply
Module ZPublisher.Publish, line 48, in call_object
Module <string>, line 6, in reinstallProducts
Module AccessControl.requestmethod, line 70, in _curried
Module Products.CMFQuickInstallerTool.QuickInstallerTool, line 784, in reinstallProducts
Module <string>, line 3, in installProducts
Module AccessControl.requestmethod, line 70, in _curried
Module Products.CMFQuickInstallerTool.QuickInstallerTool, line 686, in installProducts
Module Products.CMFQuickInstallerTool.QuickInstallerTool, line 602, in installProduct
- __traceback_info__: ('bika.lims',)
Module Products.GenericSetup.tool, line 388, in runAllImportStepsFromProfile
- __traceback_info__: profile-bika.lims:default
Module Products.GenericSetup.tool, line 1433, in _runImportStepsFromContext
Module Products.GenericSetup.tool, line 1245, in _doRunImportStep
- __traceback_info__: bika.lims.various
Module bika.lims.setuphandlers, line 610, in setupVarious
Module Products.GenericSetup.tool, line 358, in runImportStepFromProfile
Module Products.GenericSetup.tool, line 1245, in _doRunImportStep
- __traceback_info__: jsregistry
Module Products.ResourceRegistries.exportimport.jsregistry, line 14, in importJSRegistry
Module Products.ResourceRegistries.exportimport.resourceregistry, line 27, in importResRegistry
Module Products.GenericSetup.utils, line 512, in _importBody
Module Products.ResourceRegistries.exportimport.resourceregistry, line 69, in _importNode
Module Products.ResourceRegistries.exportimport.resourceregistry, line 166, in _initResources
Module Products.ResourceRegistries.tools.JSRegistry, line 224, in updateScript
Module Products.ResourceRegistries.tools.BaseRegistry, line 152, in setExpression
Module persistent.mapping, line 64, in __setitem__
Module ZODB.Connection, line 979, in register
Module ZODB.Connection, line 989, in _register
Module transaction._transaction, line 213, in join
Module transaction._transaction, line 209, in _prior_operation_failed
TransactionFailedError: An operation previously failed, with traceback:
File "/home/bika/buildout-cache/eggs/Zope2-2.13.26-py2.7.egg/ZServer/PubCore/ZServerPublisher.py", line 31, in __init__
response=b)
File "/home/bika/buildout-cache/eggs/Zope2-2.13.26-py2.7.egg/ZPublisher/Publish.py", line 455, in publish_module
environ, debug, request, response)
File "/home/bika/buildout-cache/eggs/Zope2-2.13.26-py2.7.egg/ZPublisher/Publish.py", line 249, in publish_module_standard
response = publish(request, module_name, after_list, debug=debug)
File "/home/bika/buildout-cache/eggs/Zope2-2.13.26-py2.7.egg/ZPublisher/Publish.py", line 138, in publish
request, bind=1)
File "/home/bika/buildout-cache/eggs/Zope2-2.13.26-py2.7.egg/ZPublisher/mapply.py", line 77, in mapply
if debug is not None: return debug(object,args,context)
File "/home/bika/buildout-cache/eggs/Zope2-2.13.26-py2.7.egg/ZPublisher/Publish.py", line 48, in call_object
result=apply(object,args) # Type s<cr> to step into published object.
File "<string>", line 6, in reinstallProducts
File "/home/bika/buildout-cache/eggs/AccessControl-3.0.11-py2.7-linux-x86_64.egg/AccessControl/requestmethod.py", line 70, in _curried
return callable(*args, **kw)
File "/home/bika/buildout-cache/eggs/Products.CMFQuickInstallerTool-3.0.15-py2.7.egg/Products/CMFQuickInstallerTool/QuickInstallerTool.py", line 784, in reinstallProducts
omitSnapshots=omitSnapshots
File "<string>", line 3, in installProducts
File "/home/bika/buildout-cache/eggs/AccessControl-3.0.11-py2.7-linux-x86_64.egg/AccessControl/requestmethod.py", line 70, in _curried
return callable(*args, **kw)
File "/home/bika/buildout-cache/eggs/Products.CMFQuickInstallerTool-3.0.15-py2.7.egg/Products/CMFQuickInstallerTool/QuickInstallerTool.py", line 686, in installProducts
omitSnapshots=omitSnapshots
File "/home/bika/buildout-cache/eggs/Products.CMFQuickInstallerTool-3.0.15-py2.7.egg/Products/CMFQuickInstallerTool/QuickInstallerTool.py", line 602, in installProduct
blacklisted_steps=blacklistedSteps,
File "/home/bika/buildout-cache/eggs/Products.GenericSetup-1.8.8-py2.7.egg/Products/GenericSetup/tool.py", line 388, in runAllImportStepsFromProfile
dependency_strategy=dependency_strategy)
File "/home/bika/buildout-cache/eggs/Products.GenericSetup-1.8.8-py2.7.egg/Products/GenericSetup/tool.py", line 1433, in _runImportStepsFromContext
message = self._doRunImportStep(step, context)
File "/home/bika/buildout-cache/eggs/Products.GenericSetup-1.8.8-py2.7.egg/Products/GenericSetup/tool.py", line 1245, in _doRunImportStep
return handler(context)
File "/home/bika/bikalims/src/bika.lims/bika/lims/setuphandlers.py", line 605, in setupVarious
gen.setupCatalogs(site)
File "/home/bika/bikalims/src/bika.lims/bika/lims/setuphandlers.py", line 559, in setupCatalogs
setup_catalogs(portal, getCatalogDefinitions())
File "/home/bika/bikalims/src/bika.lims/bika/lims/catalog/catalog_utilities.py", line 124, in setup_catalogs
_cleanAndRebuildIfNeeded(portal, clean_and_rebuild)
File "/home/bika/bikalims/src/bika.lims/bika/lims/catalog/catalog_utilities.py", line 417, in _cleanAndRebuildIfNeeded
catalog.softClearFindAndRebuild()
File "/home/bika/bikalims/src/bika.lims/bika/lims/catalog/bika_catalog_tool.py", line 101, in softClearFindAndRebuild
transaction.commit()
File "/home/bika/buildout-cache/eggs/transaction-1.1.1-py2.7.egg/transaction/_manager.py", line 89, in commit
return self.get().commit()
File "/home/bika/buildout-cache/eggs/transaction-1.1.1-py2.7.egg/transaction/_transaction.py", line 336, in commit
t, v, tb = self._saveAndGetCommitishError()
File "/home/bika/buildout-cache/eggs/transaction-1.1.1-py2.7.egg/transaction/_transaction.py", line 329, in commit
self._commitResources()
File "/home/bika/buildout-cache/eggs/transaction-1.1.1-py2.7.egg/transaction/_transaction.py", line 443, in _commitResources
rm.commit(self)
File "/home/bika/buildout-cache/eggs/ZODB3-3.10.7-py2.7-linux-x86_64.egg/ZODB/Connection.py", line 559, in commit
self.savepoint()
File "/home/bika/buildout-cache/eggs/ZODB3-3.10.7-py2.7-linux-x86_64.egg/ZODB/Connection.py", line 1125, in savepoint
self._commit(None)
File "/home/bika/buildout-cache/eggs/ZODB3-3.10.7-py2.7-linux-x86_64.egg/ZODB/Connection.py", line 623, in _commit
self._store_objects(ObjectWriter(obj), transaction)
File "/home/bika/buildout-cache/eggs/ZODB3-3.10.7-py2.7-linux-x86_64.egg/ZODB/Connection.py", line 658, in _store_objects
p = writer.serialize(obj) # This calls __getstate__ of obj
File "/home/bika/buildout-cache/eggs/ZODB3-3.10.7-py2.7-linux-x86_64.egg/ZODB/serialize.py", line 422, in serialize
return self._dump(meta, obj.__getstate__())
TypeError: Can't pickle objects in acquisition wrappers.
from senaite.core.
xispa
commented on July 17, 2024
This traceback occurs when a Calculation is modified, but there are registered analyses linked to the previous version of that Calculation. Steps to reproduce:
1.- create a Calculation
2.- assign an Analysis Service to the Calculation created in step 1
3.- create an Analysis Request and choose the Analysis Service used in step 2
4.- modify the Calculation created in step 1 (e.g., change the Title)
5.- go to the ZMI portal_catalog tool, click Advanced Tab and then the "Clear and Rebuild Catalog" Button.
Same same but different:
TransactionFailedError: An operation previously failed, with traceback:
File "~/evo/buildout-cache/eggs/Zope2-2.13.24-py2.7.egg/ZServer/PubCore/ZServerPublisher.py", line 31, in __init__
response=b)
File "~/evo/buildout-cache/eggs/Zope2-2.13.24-py2.7.egg/ZPublisher/Publish.py", line 455, in publish_module
environ, debug, request, response)
File "~/evo/buildout-cache/eggs/Zope2-2.13.24-py2.7.egg/ZPublisher/Publish.py", line 249, in publish_module_standard
response = publish(request, module_name, after_list, debug=debug)
File "~/evo/buildout-cache/eggs/Zope2-2.13.24-py2.7.egg/ZPublisher/Publish.py", line 138, in publish
request, bind=1)
File "~/evo/buildout-cache/eggs/Zope2-2.13.24-py2.7.egg/ZPublisher/mapply.py", line 77, in mapply
if debug is not None: return debug(object,args,context)
File "~/evo/buildout-cache/eggs/Zope2-2.13.24-py2.7.egg/ZPublisher/Publish.py", line 48, in call_object
result=apply(object,args) # Type s<cr> to step into published object.
File "~/evo/buildout-cache/eggs/Products.CMFPlone-4.3.10rc1-py2.7.egg/Products/CMFPlone/CatalogTool.py", line 442, in manage_catalogRebuild
self.clearFindAndRebuild()
File "~/evo/buildout-cache/eggs/plone.app.discussion-2.2.18-py2.7.egg/plone/app/discussion/patches.py", line 47, in patchedClearFindAndRebuild
portal.ZopeFindAndApply(portal, search_sub=True, apply_func=indexObject)
File "~/evo/buildout-cache/eggs/Zope2-2.13.24-py2.7.egg/OFS/FindSupport.py", line 239, in ZopeFindAndApply
apply_func, apply_path)
File "~/evo/buildout-cache/eggs/Zope2-2.13.24-py2.7.egg/OFS/FindSupport.py", line 239, in ZopeFindAndApply
apply_func, apply_path)
File "~/evo/buildout-cache/eggs/Zope2-2.13.24-py2.7.egg/OFS/FindSupport.py", line 227, in ZopeFindAndApply
apply_func(ob, (apply_path+'/'+p))
File "~/evo/buildout-cache/eggs/plone.app.discussion-2.2.18-py2.7.egg/plone/app/discussion/patches.py", line 26, in indexObject
obj.indexObject()
File "~/evo/buildout-cache/eggs/Products.Archetypes-1.9.11-py2.7.egg/Products/Archetypes/CatalogMultiplex.py", line 39, in indexObject
c.catalog_object(self, url)
File "~/evo/buildout-cache/eggs/Products.CMFPlone-4.3.10rc1-py2.7.egg/Products/CMFPlone/CatalogTool.py", line 349, in catalog_object
update_metadata, pghandler=pghandler)
File "~/evo/buildout-cache/eggs/Products.ZCatalog-2.13.27-py2.7.egg/Products/ZCatalog/ZCatalog.py", line 476, in catalog_object
update_metadata=update_metadata)
File "~/evo/buildout-cache/eggs/Products.ZCatalog-2.13.27-py2.7.egg/Products/ZCatalog/Catalog.py", line 340, in catalogObject
self.updateMetadata(object, uid, index)
File "~/evo/buildout-cache/eggs/Products.ZCatalog-2.13.27-py2.7.egg/Products/ZCatalog/Catalog.py", line 284, in updateMetadata
newDataRecord = self.recordify(object)
File "~/evo/buildout-cache/eggs/Products.ZCatalog-2.13.27-py2.7.egg/Products/ZCatalog/Catalog.py", line 410, in recordify
attr = attr()
File "~/evo/zinstance/src/bika.lims/bika/lims/content/analysisrequest.py", line 1989, in getLate
calculation = analysis.getCalculation()
File "~/evo/buildout-cache/eggs/Products.Archetypes-1.9.11-py2.7.egg/Products/Archetypes/ClassGen.py", line 56, in generatedAccessor
return schema[name].get(self, **kw)
File "~/evo/zinstance/src/bika.lims/bika/lims/browser/fields/historyawarereferencefield.py", line 153, in get
countPurged=True)
File "~/evo/buildout-cache/eggs/Products.CMFEditions-2.2.20-py2.7.egg/Products/CMFEditions/CopyModifyMergeRepositoryTool.py", line 496, in _retrieve
saved = transaction.savepoint()
File "~/evo/buildout-cache/eggs/transaction-1.1.1-py2.7.egg/transaction/_manager.py", line 101, in savepoint
return self.get().savepoint(optimistic)
File "~/evo/buildout-cache/eggs/transaction-1.1.1-py2.7.egg/transaction/_transaction.py", line 260, in savepoint
self._saveAndRaiseCommitishError() # reraises!
File "~/evo/buildout-cache/eggs/transaction-1.1.1-py2.7.egg/transaction/_transaction.py", line 373, in _saveAndRaiseCommitishError
t, v, tb = self._saveAndGetCommitishError()
File "~/evo/buildout-cache/eggs/transaction-1.1.1-py2.7.egg/transaction/_transaction.py", line 257, in savepoint
savepoint = Savepoint(self, optimistic, *self._resources)
File "~/evo/buildout-cache/eggs/transaction-1.1.1-py2.7.egg/transaction/_transaction.py", line 690, in __init__
savepoint = savepoint()
File "~/evo/buildout-cache/eggs/ZODB3-3.10.5-py2.7-linux-x86_64.egg/ZODB/Connection.py", line 1123, in savepoint
self._commit(None)
File "~/evo/buildout-cache/eggs/ZODB3-3.10.5-py2.7-linux-x86_64.egg/ZODB/Connection.py", line 623, in _commit
self._store_objects(ObjectWriter(obj), transaction)
File "~/evo/buildout-cache/eggs/ZODB3-3.10.5-py2.7-linux-x86_64.egg/ZODB/Connection.py", line 658, in _store_objects
p = writer.serialize(obj) # This calls __getstate__ of obj
File "~/evo/buildout-cache/eggs/ZODB3-3.10.5-py2.7-linux-x86_64.egg/ZODB/serialize.py", line 422, in serialize
return self._dump(meta, obj.__getstate__())
TypeError: Can't pickle objects in acquisition wrappers.
from senaite.core.
ramonski
commented on July 17, 2024
The metadata column getCalculation of bika_analysis_catalog seems to cause all the trouble here.
All listed issues were gone after this metadata was deleted via the ZMI and in code (https://github.com/senaite/bika.lims/blob/senaite-integration/bika/lims/catalog/analysis_catalog.py#L72)
from senaite.core.
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from senaite.core.