seattleflu Goto Github PK

assembly

Pipelines for assembling NGS data from Seattle flu study.

augur-build

the (in development) augur build for understanding influenza dynamics in Seattle

covid19-early-detection

documentation

Internal platform documentation

forecasts-ncov-states

SARS-CoV-2 variant growth rates and frequency forecasts for US states

genomic-incidence-tracker

geocoding

Geocoding addresses into census tracts

hct-autumn-2020

University-wide COVID-19 Testing Program Methods and Autumn 2020 Results

heatmap

Simple heatmap display of sample locations

husky-musher

A redirecting service for the Husky Coronavirus Testing study

id3c

Data logistics system enabling real-time pathogen surveillance. Built for the Seattle Flu Study.

id3c-customizations

Extensions of ID3C for the Seattle Flu Study

incidence-mapper

R interface to database, map model training, and model data API Server

infra

Work-in-progress Ansible setup for Seattle Flu Study infrastructure.

lab-labels

Quickly generate PDFs for printing cryo-safe labels

lab-result-reports

Tools for generating lab test result reports as PDFs

lisless

A LIS that does less, for the LIS-less.

seattle-flu-js-prototype

This repo contains prototypes and visualization sketches for the Web-based Seattle Flu platform

seattle-geojson

A collection of Seattle maps based on different administrative divisions

simulated-data

Simulated Seattle Flu Study data for developing visualization, analysis, and modeling tools.

sqlite-utils

Python CLI utility and library for manipulating SQLite databases

switchboard

A REDCap record switchboard for the SFS kit unboxing team.

website

website-y3

A simple, static website for SFS Year 3