Code Monkey home page Code Monkey logo

Comments (3)

seandavi avatar seandavi commented on July 24, 2024

This appears to be an issue whereby URLs like:

http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GPL90&form=text&view=full

return empty data tables. I have an email in to the NCBI GEO folks to see what is up.

from geoquery.

seandavi avatar seandavi commented on July 24, 2024

From the GEO folks:

------ MESSAGE BODY. YOU MAY CHANGE IT OR ADD COMMENTS ABOVE ------

Dear Sean,

Thanks for the report.

NCBI servers were impacted by the storm last night, and our systems are not
yet back to normal. I've forwarded your email to our developers in case the
problem you noted is unrelated. I'll let you know when I hear back from them.

Kind regards,
Patti

Patti Sherman, PhD
GEO Curator
[email protected]


---- END OF MESSAGE BODY. PLEASE DO NOT CHANGE THE DATA BELOW ----
SK#:20:244:0:223:4095287

Please leave the subject line unchanged, and do not change the message
at end from the line with "END OF MESSAGE BODY" to the end.

NOTE: the geo email is often abused (spoofed) by spammers. We never send
encrypted messages or attachments unless agreed. We always sign emails by
name.

The following summarizes the status of your request:
Current status of the ticket #17027070 is:
Queue: geo
Area:
Subject: Truncated GPLs via web API?
Owner:
Requestors: [email protected]
Status: open

Transaction: Mail sent by 'sherman' (19818310)

------- END OF TRNSACTION DATA. YOU MAY ADD COMMENTS BELOW -------

from geoquery.

seandavi avatar seandavi commented on July 24, 2024

Looks like this was an NCBI issue. Things are working now.

gpl = getGEO("GPL90")
File stored at:
/var/folders/21/8t47kwys6vqb8606kdfn71780000gn/T//Rtmp9UGGe1/GPL90.soft
gpl = getGEO("GPL96")
File stored at:
/var/folders/21/8t47kwys6vqb8606kdfn71780000gn/T//Rtmp9UGGe1/GPL96.soft
sessionInfo()
R version 3.0.2 Patched (2014-01-22 r64855)
Platform: x86_64-apple-darwin10.8.0 (64-bit)

locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8

attached base packages:
[1] parallel stats graphics grDevices utils datasets methods
[8] base

other attached packages:
[1] GEOquery_2.28.0 Biobase_2.21.7 BiocGenerics_0.7.5
[4] BiocInstaller_1.12.0

loaded via a namespace (and not attached):
[1] RCurl_1.95-4.1 XML_3.95-0.2

date()
[1] "Fri May 2 12:14:43 2014"

from geoquery.

Related Issues (20)

Recommend Projects

  • React photo React

    A declarative, efficient, and flexible JavaScript library for building user interfaces.

  • Vue.js photo Vue.js

    🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.

  • Typescript photo Typescript

    TypeScript is a superset of JavaScript that compiles to clean JavaScript output.

  • TensorFlow photo TensorFlow

    An Open Source Machine Learning Framework for Everyone

  • Django photo Django

    The Web framework for perfectionists with deadlines.

  • D3 photo D3

    Bring data to life with SVG, Canvas and HTML. 📊📈🎉

Recommend Topics

  • javascript

    JavaScript (JS) is a lightweight interpreted programming language with first-class functions.

  • web

    Some thing interesting about web. New door for the world.

  • server

    A server is a program made to process requests and deliver data to clients.

  • Machine learning

    Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.

  • Game

    Some thing interesting about game, make everyone happy.

Recommend Org

  • Facebook photo Facebook

    We are working to build community through open source technology. NB: members must have two-factor auth.

  • Microsoft photo Microsoft

    Open source projects and samples from Microsoft.

  • Google photo Google

    Google ❤️ Open Source for everyone.

  • D3 photo D3

    Data-Driven Documents codes.