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seandavi avatar seandavi commented on July 4, 2024

@hpages and @lshep, wrote to NCBI GEO today to see what they think is going on.

There are several other issues that are slightly related including #15, #31, and #33.

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hpages avatar hpages commented on July 4, 2024

Thanks @seandavi !

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hpages avatar hpages commented on July 4, 2024

FWIW GEOquery and ChIPXpress are not affected in today's build report but other packages are e.g. PGSEA on the Linux builder:

https://bioconductor.org/checkResults/3.6/bioc-LATEST/PGSEA/malbec1-buildsrc.html

The set of affected packages changes everyday...

H.

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seandavi avatar seandavi commented on July 4, 2024

I pointed the NCBI GEO folks to this GitHub issue, so if any other details become available or relevant, we can drop them here for them. Thanks for the update, @hpages.

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kalugny avatar kalugny commented on July 4, 2024

@seandavi from looking at the logs, it's the same issue as #38 so it's not really a connection issue

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seandavi avatar seandavi commented on July 4, 2024

Fixed by 2955763. Thanks, everyone, for getting this sorted out.

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