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3dfistfaks

ai-and-abdominal-ct-resources

Resources for people working on Artificial Intelligence (AI) and Machine Learning (ML) projects in computed tomography (CT) scan.

ai-in-med-trend

Trend of AI in Medicine and GI

antibioticresitance_hpylori

Investigating Antibiotic Resistance to H.pylori using gene expression from whole genome sequence data with unsupervised and supervised methods

bariatricsurgery_analysis

Code for statistical analysis and visualization of scientific project entitled "Benefit of Exercise after Laparoscopic Sleeve Gastrectomy Surgery: 4-Year Follow-up of Weight Regain and Glucose Profile"

buttons

How to create Markdown buttons.

covid-19_pregnancy

This code is used for analysis of a research project entitled "Radiologic and Clinical Features of COVID-19 Pneumonia in Pregnancy: A Comparison with Matched Non-Pregnant Control in Tehran, Iran."

covid19_seriallabratory

This is the code used for the article entitled "Serial and Admittance Laboratory Profile of COVID-19: Dynamic Trend of Poor Prognostic Biomarkers"

drawio-github

Drawio GitHub Integration

ehran_covid_large-language-models-vs-classical-machine-learning

exminer

creating MCQs from your PDFs by leveraging LLMs.

extract_telegram_contact_to_csv

This repo is created for other people looking to convert their telegram exported contacts to CSV (so they can import in in google account or elsewhere)

gi-ai-ehr_autoevidenceupdate_nlp

This code will automaticly update latest articles applying AI on EHR data in the field of GI.

happytreeresearchfriends

Here I will store some learning contents, learning pathways, and opportunities so that I can re-use them. Happy Tree Research Friends is a group that I started three years ago with my mentee and friends.

llm-perfromance-in-medicine-wgiexample

4 Vision Lanuage and 20 Large Language Models Perfromance on Gastroenterology Board Exam Self-Assessment

llms_in_gi

Papers, models, and datasets aiming at evaluation of Large Language Models (LLM) in gastroenterology

medqa-bby

MedQA-but-better-yield (MedQA-BBY) is build on top of MedQA dataset but enriched with labels, as well as two correct options and one negative point option, and three 0 point options. The labels include:(1) question topic regarding system, discipline, and subspeciality, (2) token length, (3) Bloom taxonomy

meta-analysis

This is a sample code to do meta-analysis of systematic review studies. Useful link to vides are also embedded in the code.

my_full_stack_development_path

my_saved_codes

My saved codes

mychatgpt

This is how I am using chatGPT without using their interface (through API).

no-code-app-for-gpt-research

No code streamlit app for running GPT models on excel file (and ground truth). This could be used for (1) generating unstructured output, or (2) structured output (for extraction or generating variables).

pancanaid

Pancreas Cancer AI-Driven Diagnosis in CT scan and EUS Imaging: A protocol for an Observational Multicentric Ambispective Study

pancanaid-sam-home

PanCanAID SAM Home

parsbench-biomedical

This repository contains multiple-choice questions and real-world scenarios for benchmarking large language models in Persian (Farsi) and English. The content is designed to evaluate the performance and capabilities of various language models across these two languages.

sdamirsa

This is me

sink_in_ct_project

In this repor, I will share my codes during past three years wokring on a multi-institutional project on CT scan (PanCanAID).

sinopharm_c19_response_hemodyalsispatients

Sinopharm Vaccine Respone in Hemodyalisis Patients.

stapp_in_colonochartreview_v1.0_stable

Stapp_in_colonochartreview_v1.0_stable

tehran_covid_cohort

Code for data extraction and analysis of a COVID project with 10,000 participants (COVID-19 inpatients)