Seyed Amir Ahmad Safvi-Naini's Projects
Resources for people working on Artificial Intelligence (AI) and Machine Learning (ML) projects in computed tomography (CT) scan.
Trend of AI in Medicine and GI
Investigating Antibiotic Resistance to H.pylori using gene expression from whole genome sequence data with unsupervised and supervised methods
Code for statistical analysis and visualization of scientific project entitled "Benefit of Exercise after Laparoscopic Sleeve Gastrectomy Surgery: 4-Year Follow-up of Weight Regain and Glucose Profile"
How to create Markdown buttons.
This code is used for analysis of a research project entitled "Radiologic and Clinical Features of COVID-19 Pneumonia in Pregnancy: A Comparison with Matched Non-Pregnant Control in Tehran, Iran."
This is the code used for the article entitled "Serial and Admittance Laboratory Profile of COVID-19: Dynamic Trend of Poor Prognostic Biomarkers"
Drawio GitHub Integration
creating MCQs from your PDFs by leveraging LLMs.
This repo is created for other people looking to convert their telegram exported contacts to CSV (so they can import in in google account or elsewhere)
This code will automaticly update latest articles applying AI on EHR data in the field of GI.
Here I will store some learning contents, learning pathways, and opportunities so that I can re-use them. Happy Tree Research Friends is a group that I started three years ago with my mentee and friends.
4 Vision Lanuage and 20 Large Language Models Perfromance on Gastroenterology Board Exam Self-Assessment
Papers, models, and datasets aiming at evaluation of Large Language Models (LLM) in gastroenterology
MedQA-but-better-yield (MedQA-BBY) is build on top of MedQA dataset but enriched with labels, as well as two correct options and one negative point option, and three 0 point options. The labels include:(1) question topic regarding system, discipline, and subspeciality, (2) token length, (3) Bloom taxonomy
This is a sample code to do meta-analysis of systematic review studies. Useful link to vides are also embedded in the code.
My saved codes
This is how I am using chatGPT without using their interface (through API).
No code streamlit app for running GPT models on excel file (and ground truth). This could be used for (1) generating unstructured output, or (2) structured output (for extraction or generating variables).
Pancreas Cancer AI-Driven Diagnosis in CT scan and EUS Imaging: A protocol for an Observational Multicentric Ambispective Study
PanCanAID SAM Home
This repository contains multiple-choice questions and real-world scenarios for benchmarking large language models in Persian (Farsi) and English. The content is designed to evaluate the performance and capabilities of various language models across these two languages.
This is me
In this repor, I will share my codes during past three years wokring on a multi-institutional project on CT scan (PanCanAID).
Sinopharm Vaccine Respone in Hemodyalisis Patients.
Stapp_in_colonochartreview_v1.0_stable
Code for data extraction and analysis of a COVID project with 10,000 participants (COVID-19 inpatients)