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bioconvert

Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.

bwa

Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

esm

Evolutionary Scale Modeling (esm): Pretrained language models for proteins

evoplay

fqtool

A useful fastq processing tool revised from fastp

gapit

Genome Association Predict Integrate Tools

pbwa

Parallel bwa implementation

qedit

RNA editing quantification in deep transcriptome data

tape

Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different domains of protein biology.

visualmsi

Detect and visualize microsatellite instability(MSI) from NGS data