`functions` is not recognized about reactionnetworkimporters.jl HOT 6 OPEN

I noticed this is already discussed #4. I am sorry..

from reactionnetworkimporters.jl.

Yeah, the main issue is I’ve never found documentation on how the function block is supposed to work. That would make it a lot easier to understand what is needed here.

from reactionnetworkimporters.jl.

Di you try importing via SBML using SBMLToolkit?

from reactionnetworkimporters.jl.

Hi @isaacsas, thank you for your reply.
Yes, and if I import the model via SBML using SBMLToolkit.jl, it works fine.
However, it seems that SBMLToolkit.jl dose not support enegy-based BioNetGen specification, e.g., https://github.com/himoto/rosa_webinar_20Jan2021/blob/main/toy_example_RAF_RAFi.sbml.
I found that I could import eBNG models via .net file using ReactionNetworkImporters.jl and that's why I hope funcitons is supported in this package.

from reactionnetworkimporters.jl.

Got it. Unfortunately, I have never found documentation for the net file function block, which makes understanding how it is supposed to work a bit difficult. I'd like to add support for this at some point, but I'm not sure I'll have time myself to work on it in the near term. If you'd like to give it a shot to add such support via a PR, the code for loading / parsing net files is relatively short:

https://github.com/SciML/ReactionNetworkImporters.jl/blob/master/src/parsing_routines_bngnetworkfiles.jl

from reactionnetworkimporters.jl.

Thank you very much @isaacsas, I will look into the net file function block.

from reactionnetworkimporters.jl.