Comments (3)
Thanks for these issues.
- I'll re-add
graph_gravity
and others to the new visualizations. - I'll update the documentation & examples
- The older color function default was: distance to
.min()
of first dimension ofprojected_X
. The new color function default is to color by row order ofinverse_X
. I think I liked the older default better. average_signal_cluster
was deprecated, and just passing the target labels to thecolor_function
should do much of the same.- If your filter function output is 2D, and you want to use this for coloring, you have to somehow turn this into a 1D output. So you will likely lose some information. A crude way may be sum both outputs (
df.color_function = df.tsne_1st_dim + df.tsne_2nd_dim
) - The hard way to solve for above: split nodes in half and allow halves to be colored with two different colors (hard), the pragmatic way is allowing a 2D (n,m) array where n is number of rows and m are the different color function outputs. Then you can select these from a dropdown menu in the visualization. I'll begin work on this very soon. Something like:
html = mapper.visualize(graph,
color_function=[[0,1],[2,3]],
color_function_names=["target", "age"])
from kepler-mapper.
All examples are up to date and running now in master.
from kepler-mapper.
Some of these issues are addressed in PR #77
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Related Issues (20)
- try different min_intersections from the visualization
- not able to understand this HOT 1
- Class methods are not being rendered by autosummary
- Examples, gallery not included in readthedocs build HOT 2
- idea: rewrite main readme and release file to .rst, import into docs HOT 5
- Bug: min_cluster_samples should not be set to a non-integer HOT 4
- plotlyviz expects 1d color values, but gets 2d instead HOT 1
- Outdated Documentation HOT 1
- `test_cubes_overlap` may be faulty HOT 2
- Idea - Convert networkx graph object or a graph in edge list format to a Mapper object HOT 8
- Doc toc restructure proposal (minor) HOT 4
- Shadowed test fails to run
- Min-Max confusion in projection statistic in cluster details
- making html files generated by visualize self-contained
- plotlyviz error
- Losing data
- Please refer to igraph instead of python-igraph HOT 2
- Directly producing color values for each node
- Overlapping bins in the HTML visualization.
- Issue with generating visuals in mapper HOT 2
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