Comments (4)
I m not exactly sure, but I think I may have addressed moving duplicate rheobase search code from nsga.py -> exhaustive_search.py. The greater problem is how to package it up as a Neuronunit test object inside tests/init.py still remains.
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Hi @rgerkin, when we had the meeting in person the Friday a week and a day ago. You mentioned an approach to putting the Rheobase method back inside the tests/init.py collection of neuronunit test classes (in a way that from SCOOPs perspective, it would be an un-nested function (level 0). What was that approach again? I feel like that will be the ultimate way to de-duplicate code should it work.
Also in that meeting I believe you said that the error should be derived from the 'sort_key', as the sort key is a way of normalizing different score metrics into one inter-operable score scheme.
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Move a lot of the stuff that you use to test your code into a scratch directory outside of the neuronunit module (but inside the neuronunit directory itself, i.e. at the same level a setup.py
, unit_test
, etc.
from neuronunit.
For now we just need to do enough of this to push out 0.2, i.e. all if it needs to be outside the core of neuronunit, in the optimization directory, and extra cruft needs to be removed.
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Related Issues (20)
- newer test class for passive elephant tests breaks parallelism in dask, in the case of brian2 backend. HOT 4
- Documenting all Score edge cases that break optimization gradients HOT 3
- A document Notice to debug set PARALLEL_CONFIDENT=False
- Test Suites should be dictionaries not lists. HOT 7
- Use standardized units throughout
- Sciunit judge no longer works with static Models. How can I opt of using the ProtocolToFeaturesTest? HOT 8
- Druckmann Tests are not proper tests
- Confirm that NeuronUnits jNeuromLB backend really can be regarded as a ground truth. HOT 7
- NU test.protocol should be flat or more predictable to traverse.
- Major NU interface redesigns could come with interface diagrams.
- documentation chapters of NeuronUnit should be upgraded to Unit Tests via pytest-ipynb
- 2.5 different code locations that determine sim_length need to be collapsed into one.
- Duplicated content injected current test protocol/parameter
- Installation Fails on Windows HOT 1
- create branch optimization based on dev, that I can merge pull requests into. HOT 2
- Migrate away from travis HOT 2
- Merge error in backend __init__.py HOT 2
- Missing closing ' HOT 1
- Relax constraints on install requirements HOT 1
- unresolved merge conflict in requirements.txt
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