Issue with alignment about syri HOT 2 CLOSED

On Fri, Oct 7, 2022 at 6:23 PM Manish Goel ***@***.***> wrote: Hi Diya, Yes, you are correct, inverting chromosomes might help. You can try fixchr <https://github.com/schneebergerlab/fixchr> to ensure that the same strands of chromosomes are being compared. However, the error here suggests that the alignment coordinates and the reference sequence size are inconsistent. For example, the reference chromosome size is 1MB but there is an alignment with an alignment coordinate of 1.1MB. I think you need to check that the alignments files and genome files are consistent. Best Manish — Reply to this email directly, view it on GitHub <#161 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AU2LPXFL573TYOG2NNLBAITWCBE7HANCNFSM6AAAAAAQ7R46F4> . You are receiving this because you authored the thread.Message ID: ***@***.***>