schapirolabor Goto Github PK
Name: Schapiro Lab
Type: Organization
Location: Germany
Name: Schapiro Lab
Type: Organization
Location: Germany
Background subtraction for COMET platform
Histology Topography Cytometry Analysis Toolbox
staging of imc images for mcmicro
All of Galaxyproject EU's cloud infrastructure.
Ansible playbook for managing UseGalaxy.eu infrastructure. For the playbook managing Galaxy itself, see https://github.com/galaxyproject/usegalaxy-playbook/
Lab rotation report 2/2022 – 4/2022, Krešimir Beštak
Useful tools for converting segmentation masks into bounding box objects.
Multiple-choice microscopy pipeline
CELESTA phenotyping module for MCMICRO
Website for the MCMICRO hackathon 2022
A small demo workflow for MCMICRO using only nf-core modules. Result of the March 2023 nf-core hackathon.
Module to prepare QC output from MCMICRO for MultiQC.
Interactive report for MCMICRO
Data analysis for “Spatial omics of acute myocardial infarction reveals a novel mode of immune cell infiltration”
Automated identification of micronuclei for chromosomal instability (CIN) quantification.
This repository contains a streamlit app for CIN inferences based on the micronuclAI tool
Fill empty grids of a panorama made from several tiles with sensefull values (mean of imediate neighbourhood)
Repository for local modules used in nf-core/molkart
utitilies for macsima image sets
A single repo of all available/potential tabular normalization methods for downstream analysis of spatial proteomics datasets.
Piecewise alignment for layers of mosaics
Formatting tif/ome-tif metadata for MCMICRO staging modules
Quantification module for mcmicro
This is a repo that will implement scimap from labsyspharm/scimap and add CLI for different tools
Image preprocessing for different segmentation approaches.
Analysis of RNAscope images for human MI samples for Kuppe, Ramirez et al 2022.
Tool to assign FISH spots to their corresponding cell
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.