error in prune about ecolime HOT 4 CLOSED

Sorry, I forgot to mention that you'll need to pull the latest cobrapy commits in order to run prototype 41.

from ecolime.

OK. Moving in the right direction.

I didn't have Gurobi installed. Is it necessary here? I can install it.

Traceback (most recent call last):
  File "prototype_41.py", line 552, in <module>
    compiled_expressions=expressions, debug=False, solver = 'gurobi')
  File "/Users/zaking/sharedrepos/minime/minime/solve/algorithms.py", line 54, in binary_search
    solver = get_ME_solver(solver)
  File "/Users/zaking/sharedrepos/minime/minime/solve/algorithms.py", line 34, in get_ME_solver
    return solver_dict[solver]
KeyError: 'gurobi'

from ecolime.

No it's not necessary. You can delete that argument and it'll use soplex. Gurobi is just faster, though inaccurate. We use it for quickly determining growth/no growth for debugging.

from ecolime.

awesome. it worked!

from ecolime.