Non-Unique entries in list of Reactants/Products about sbml-test-suite HOT 6 CLOSED

OK! The repository now contains tests 1420-1453 (in the 'develop' branch; https://github.com/sbmlteam/sbml-test-suite/tree/develop), which cover the above tests (one per line, usually), with the 'n' and 'm' tests testing both constant and variable assigned stoichiometries (using events and rate rules), and also with StoichiometryMath, for l2 models.

They've all been tested with RoadRunner, but an external test would be great, too. Thanks!

(Also, there are a lot of new l3v2 tests in general--let us know if you get a chance to implement support for them, as it'll mean l3v2 could be officially released!)

from sbml-test-suite.

That makes sense, and is a good idea. I've been adding new tests to the test suite recently anyway; I'll add this to the list. We'd need multiple entries, with different stoichiometries, and probably negative stoichiometries, too. And variable stoichiometries. Off the top of my head, here's what I think I'd put in:

A + A ->
A + 2A ->
A + -A ->
A -> A
A -> 2A
2A -> A
2A -> -3A
-2A -> 3A
-> A + A
-> A + 2A
A + A -> B + B
A + B -> A + B
2A + -B -> -2A + B
A + 2A + -4A -> 5A + -2A + A + A
nA + mA ->
nA -> mA
-> nA + mA
nA + mA -> oB + pB
nA + mB -> oA + pB

Anything else I should add? Thanks for the suggestion!

from sbml-test-suite.

Great!
Might be reasonable to also make combinations with AssignedConstantStoichiometry (as in 1064-1102) and AssignedVariableStoichiometry (as in 1103-1109).

from sbml-test-suite.

Very impressive. Thanks for doing that!

from sbml-test-suite.

I can confirm that that test cases 1420-1453 are working for me. l3v2 tests will take a little bit longer ( we do not support the full spectrum of SBML functionality so you will probably also need testing from more tools)

from sbml-test-suite.

Great! Glad to hear they're working for you. Do let us know if you find more situations not covered by the test suite; we'll be happy to add them in. Closing this tracker item for now; feel free to re-open if something else comes up.

from sbml-test-suite.