Comments (1)
Hi Kevin,
I would try lowering the cutoffs you're using. You may have weaker markers in your data.
from seurat.
Related Issues (20)
- subset() function does not respect the order of indices HOT 1
- `FindAllMarkers` - `fc.name` column is "avg_log2FC" with "scale.data" slot, rather than "avg_diff" HOT 2
- Issue with Running Seurat(v5.0.3) on Correlation Matrix Data HOT 1
- is seurat(v5.0.3) does not support a correlation Matrix data as input?? HOT 1
- [PowerPC] Errors is `test_integration5` and `test_load_10X` [ FAIL 4 | WARN 0 | SKIP 29 | PASS 532 ]
- How to split ome.tiff image? I need to do cell segmentation but my image is too large and I need to split it. Thank you. HOT 3
- SpatialFeaturePlot: change font size of color scale so gene name is legible HOT 1
- An issue with running FindTransferAnchors on SCT-processed data. HOT 2
- FindAllMarkers and obj@assays$Spatial@data
- Issues with subsetting old Seurat objects with Seurat v5 Error in strsplit(x = colnames(Embeddings(object = value)), split = "_") : non-character argument HOT 2
- Extract cell barcodes from FeaturePlot blend = TRUE HOT 5
- Arrow package issue for Visium HD branch HOT 1
- different UMAPS from the same data
- About FindVariableFeature selection HOT 1
- Error when loading VisiumHD using Seurat 5.1 HOT 1
- SCTransform changing variable.features.n results in different genes
- SCTransform some variable features absent from scale.data
- nCount VlnPlot, full.umap.sketch, SpatialDimPlot issues HOT 2
- I am unable to run the read10X function for analysis of my RNA seq Data HOT 43
- SaveH5Seurat error but not display any information
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from seurat.