Comments (6)
liziyie
commented on July 18, 2024
2
The problem happened in this command:
integrated[[reconstructed.assay]] <- CreateAssayObject(
data = as(object = SummarizedExperiment::assay(x = out), Class = "sparseMatrix"),
)
The function failed to extract the reconstructed assay from the output of fastmnn "out".
I don't know how to do this as well... when check "out" it shows like this
assay(out)
Error in (function (cond) :
error in evaluating the argument 'x' in selecting a method for function 'type': object of type 'S4' is not subsettable
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Lucyyang1991
commented on July 18, 2024
1
I have the same issue that was reported in Seurat: satijalab/seurat#7295, so just want to follow a workaround.
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menage95
commented on July 18, 2024
I am also having this issue. Did anyone find a resolution?
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stevensalvini
commented on July 18, 2024
After spending time chasing a solution I gave up so I’m afraid my “resolution” was to do a bare metal reinstall of Linux and everything above! When I did so it all worked as it should.
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kmh005
commented on July 18, 2024
Also looking for guidance here, Seurat5, Windows 10 machine.
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bravedu01
commented on July 18, 2024
Same issue in macbook. Anyone has a resolution?
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