SeuratData won't install any datasets about seurat-data HOT 5 CLOSED

Hi,

Sorry for the delayed response. Are you able to load the panc8 dataset? Also, do the messages reproduce from a fresh R session?

from seurat-data.

Hello,
I apologize for the late reply (I've been really busy lately).

Sadly, I wasn't able to load the panc8 dataset, nor any other dataset. The aforementioned messages do in fact reproduce from a fresh R session.

from seurat-data.

What message do you see when trying to load datasets that you've installed? Could you also provide the output of AvailableData()?

library(Seurat)
library(SeuratData)
AvailableData()
data(panc8)
panc8

from seurat-data.

This issue has been automatically closed because there has been no response to our request for more information from the original author. With only the information that is currently in the issue, we don't have enough information to take action. Please reach out if you have or find the answers we need so that we can investigate further.

from seurat-data.

After further inspection, I realized that the InstallData() uses as input the row names of AvailableData(), instead of the values of the column dataset. Hence, using the command InstallData("panc8.SeuratData") instead of InstallData("panc8") fixed this issue.

Sorry for the trouble

from seurat-data.