saramwillis Goto Github PK

aws_cli_wrapper

A wrapper to query the storage classes of objects stored in UArizona's Tier 2 AWS buckets

cloud_storage_benchmarking

Benchmarking work for data transfer speeds between HPC, AWS S3, Google Drive, and CyVerse.

example-docs

github-ci

An example GitHub Action (CI) to build a Singularity container

hpc_examples

Examples of PBS array jobs, using GNU parallel, automating cloud storage transfers, among other HPC tasks (growing repo)

overlappinggenesproject

Python scripts and supplementary data used in overlapping genes project

proteinevolution

Copy of Masel Lab communal repository for scripts/data used in long term trends in protein evolution project.

scipy

SciPy library main repository

slurm-wrappers

Custom Slurm wrapper scripts to make finding job histories and system resource usage more easily accessible

tier-2-storage-management

Notes on using UArizona's HPC tier 2 storage (AWS with intelligent tiering and onsite array). Includes information on setting up software, file transfer options, designating AWS storage tier, submitting restore requests, etc.

tier2-viewer

A CLI utility to view the contents of an AWS bucket. Requires aws CLI.