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2022-uganda-single-cell-rna-seq-analysis

2022 Kampala Uganda Remote Single Cell RNA-Seq Analysis

bigdataclass-ace-sem-ii-2021-2022

This repository contains the teaching material for the BigBioDataClass-ACE Semester-2 Year: 2021-2022

datasciencelecturesspring2023

Materials for the International Data Science Lecture Series for Spring 2023

genomenote

This Nextflow DSL2 pipeline takes aligned HiC reads, creates contact maps and a table of statistics.

mgert

Mobile Genetic Elements Retrieving Tool

ml-iamr

mr-hackathon

This is a repository for mendelian randomization analysis following the workshop in Uganda at MRC/UVRI & LSHTM Uganda Research Unit.

mr-uganda-hackathon-2023-6

Group 6 project

mscmak2022-introductiontopython

Bio python introduction lecture notebooks

rdscan

A snakemake workflow for regions of difference discovery in Mycobacterium tuberculosis complex (MTBC) samples

readmapping

Nextflow DSL2 pipeline to align short and long reads to genome assembly. This workflow is part of the Tree of Life production suite.

tbprofiler

Profiling tool for Mycobacterium tuberculosis to detect ressistance and strain type from WGS data

variantcalling

This Nextflow DSL2 pipeline calls variants on long read alignment. It is run after sanger-tol/readmapping in the Sanger ToL production suite but with options to run on unaligned reads.