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Name: Samuel Miravet-Verde
Type: User
Company: ETH-Zurich
Bio: Postdoctoral bioinformatics researcher @SushiLab // Past: PhD in computational biology in Design of Biological Systems (Serrano Lab) at @CRG-CNAG
Name: Samuel Miravet-Verde
Type: User
Company: ETH-Zurich
Bio: Postdoctoral bioinformatics researcher @SushiLab // Past: PhD in computational biology in Design of Biological Systems (Serrano Lab) at @CRG-CNAG
Running some examples and tests learning to use the Circos genome visualization tool.
A resource of the Zurich bioinformatics and computational biology community
CRISPR detection web application
Scripts and results from the project of sequence analysis of the Mycoplasma pneumoniae genome looking for potential 20-mers to target CRISPR interruption processes. Project developed for the Centre for Genomic Regulation, under the guidance of Alicia Broto, Maria Lluch and Luis Serrano.
R package for DER Finder, a method for differential expression analysis of RNA-seq data
Diffraction includes several functions to work and perform differential analysis over pile ups coming from non fractionated RNASeq analysis.
Calculates the ratio of non-synonymous mutations per non-synonymous site, to synonymous mutations per synonymous site, given a sequence of DNA. This can be used as a metric for characterising selection on a region of DNA.
Mount Sinai - Dynamical Modeling Methods for Systems Biology (March 2014)
Materials for ELIXIR-EXCELERATE Train The Trainer workshops and courses
Python library to support exhaustive testing and model checking
Model for kinetic model of transcription initiation
MATLAB scripts to simulate examples of biological systems exposed in the book "An Introduction to Systems Biology", written by Uri Alon.
Several scripts and courses to learn Java programming
Repository containing Jupyter Notebooks for most of the blog posts on my blog. For example, there are data visualization, data manipulation, and data analysis code examples in the Notebooks
Defining variants (SNPs, insertions and deletions) for a set of HiSeq samples exploring the variability in populations of M. pneumoniae transformed with a killswitch cassette
Kinetic paper
Code and scripts written following the book "Learn C the Hard Way" (http://c.learncodethehardway.org/book/)
repo to learn the basics in github
Several trials and scripts learning and controlling MATLAB
matrix code animation for curses - see how deep the rabbit-hole goes
A membrane builder script using bash, tcl and vmd
Some trials in order to learn basics in MySQL
nussinovs algorithm for RNA secondary structure prediction
Project for the subjects of Structural Bioinformatics and Python (M.Sc. in Bioinformatics)
A transposon sequencing protocol that selects insertions in-frame to expressed genes
Model-based testing in Python
Python and R scripts to perform basic Machine Learning approaches
The "Python Machine Learning (2nd edition)" book code repository and info resource
Some basic python functions
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.