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alzheimers_gwas_1mb_genes_list

Extract gene names within +-500kb of all known Alzheimer's disease SNPs passing genome-wide significance

colorway

Functions for colors in R

dge_workshop

ggprism

ggplot2 extension inspired by GraphPad Prism

hammond-et-al_2019_microglia_scrnaseq

Repository for "pseudo"-objects based on analysis in Hammond et al., 2019 (https://doi.org/10.1016/j.immuni.2018.11.004)

hdwgcna

High dimensional weighted gene co-expression network analysis

liger

R package for integrating and analyzing multiple single-cell datasets

marsh_et-al_2020_scrnaseq_dissociation_artifacts

Code to reproduce analysis objects for the data contained in https://www.biorxiv.org/content/10.1101/2020.12.03.408542v1

marsh_et-al_2022_scrnaseq_dissociation_artifacts

Code to reproduce analysis objects for the data contained in Marsh et al., 2022

nebulosa

R package to visualize gene expression data based on weighted kernel density estimation

samuel-marsh

Repository for personal website. Made using postcards R package.

scater

Clone of the Bioconductor repository for the scater package.

sccustomize

R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.

sceasy

A package to help convert different single-cell data formats to each other

screticulater

Scripts for passing single cell analyses from R objects to python packages and back.

scuttle

Clone of the Bioconductor repository for the scuttle package.

seurat

R toolkit for single cell genomics

seurat-object

seurat-wrappers

Community-provided extensions to Seurat