samnooij Goto Github PK
Name: Sam Nooij
Type: User
Bio: Bioinformatics researcher in medical microbiology
Location: Netherlands
Name: Sam Nooij
Type: User
Bio: Bioinformatics researcher in medical microbiology
Location: Netherlands
Workshop website
Basic Sequence Taxonomy Annotator
CAT/BAT: tool for taxonomic classification of contigs and metagenome-assembled genomes (MAGs)
Code Refinery workshop by the Netherlands eScience Center (https://escience-academy.github.io/2020-11-16-code-refinery/)
Based on the exercise during the Code Refinery workshop
Compare the taxonomic classifications of different metagenomics pipelines (Jovian and CAT)
Bioinformatics containers
Automated curation of virus genomic sequences for Typing Tools
Reorients assembled microbial sequences
Reference-free, sequence composition-based engraftment analysis of metagenomes from the FECBUD study
A pipeline (and collection of scripts) to help compare the output of GenomeDetective
Genomics Workshop Overview
Genomic Sequence Clustering methods
A good enough project template for writing reproducible code
Metagenomica
Read and write GenBank format
Lesson on data organization and project setup for genomics
Altered version of PathoFact to work more conveniently with SLURM and large input files
PEP specification
Practice repository for the 2020-02-11 workshop on Reproducible and Open Science
Scripts and notebooks used to solve exercises from rosalind.info
A collection of scripts that I have written to perform biological sequence analyses
Lesson for the shell for genomics
This repository purely exist so people can say they are forking shirtballs.
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.