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adventofcode

beacon-go

AppEngine implementation of the Beacon API from the Global Alliance for Genomics and Health written in Go.

data-science-sequencing.github.io

Web site for the class EE 372 : Data Science for High-Throughput Sequencing at Stanford

deepvariant

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

fhir

FHIR Protocol Buffers

gcp-deepvariant-runner

This repository contains a docker container that runs DeepVariant on the Google Cloud Platform.

gcp-deepvariant-runner-old

This repository contains a docker container that runs DeepVariant on the Google Cloud Platform.

gcp-synthea

A framework to run Synthea on GCP

gcp-variant-transforms

GCP Variant Transforms

gcp-variant-transforms-java

moler_pagerank

Fast Personalized Pagerank Implementation (Moler PageRank)

nucleus

Python and C++ code for reading and writing genomics data.

pangeo

A place to discuss and track issues related to the Pangeo project

persian-lexicon

A lexicon of 70K unique Persian (Farsi) words.

pipelines-tools

Tools for developing and running pipelines with the Genomics API

python-bigquery

scalable_analytics

Public collaboration of Scalable Single Cell Analytics

ssxcc

Sparse Set XCC Solver in Go based on Donald Knuth's Dancing Cells talk

synthea

Synthetic Patient Population Simulator

table-testing

requirements, examples, and tests for expression matrix file formats

terraform-examples

Terraform Examples

variant-annotation

Use cloud technology to annotate human sequence variants in parallel.

variant-processing-in-bigquery

Sample queries to highlight the benefits of storing genomic variants in BigQuery.

wordle-solver

A universal Wordle solver that works with any language