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Ryan Richholt's Projects

aws-parallelcluster icon aws-parallelcluster

AWS ParallelCluster is an AWS supported Open Source cluster management tool to deploy and manage HPC clusters in the AWS cloud.

confuse icon confuse

painless YAML config files for Python

conpair icon conpair

Concordance and contamination estimator for tumor–normal pairs

ichorcna icon ichorcna

Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.

leap-day icon leap-day

Leap day is a Jekyll theme for GitHub Pages

memtest icon memtest

Tiny tool for testing java -Xm... options

multiqc icon multiqc

Aggregate results from bioinformatics analyses across many samples into a single report.

phaser icon phaser

phasing and Allele Specific Expression from RNA-seq

samtools icon samtools

Tools (written in C using htslib) for manipulating next-generation sequencing data

seurat icon seurat

R toolkit for single cell genomics

snpsniffer icon snpsniffer

Tool for checking genotype concordance between multiple assays

spliceai icon spliceai

A deep learning-based tool to identify splice variants

styleguide icon styleguide

Style guides for Google-originated open-source projects

tempstore icon tempstore

A simple container for handling multiple tempfiles

tidyid icon tidyid

Sample identifiers that are easy to read and write

tidyss icon tidyss

A collection of tools for making better sample sheets

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