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ruoqi-liu avatar ruoqi-liu commented on September 24, 2024

As shown in mapping.py, we use three pickle files which are located in "pickles/":

sider_eval_pairs = pickle.load(open('pickles/sider_eval_pairs_final.pkl', 'rb'))
drugid2rxnorm = pickle.load(open('pickles/drugid2rxnorm_mapping.pkl', 'rb'))
rxnorm2features = pickle.load(open('pickles/rxnorm2features_mapping.pkl', 'rb'))
  • "sider_eval_pairs" contains the ground truth evaluation pairs obtained from SIDER
  • "drugid2rxnorm" contains the ID mapping from the drug's id in FAERS to Rxnorm id
  • "rxnorm2features" contains the ID mapping from Rxnorm id to binary-encoded chemical structures.

from lp-sda.

himiko14122 avatar himiko14122 commented on September 24, 2024

As shown in mapping.py, we use three pickle files which are located in "pickles/":

sider_eval_pairs = pickle.load(open('pickles/sider_eval_pairs_final.pkl', 'rb'))
drugid2rxnorm = pickle.load(open('pickles/drugid2rxnorm_mapping.pkl', 'rb'))
rxnorm2features = pickle.load(open('pickles/rxnorm2features_mapping.pkl', 'rb'))
* "sider_eval_pairs" contains the ground truth evaluation pairs obtained from SIDER

* "drugid2rxnorm" contains the ID mapping from the drug's id in FAERS to Rxnorm id

* "rxnorm2features" contains the ID mapping from Rxnorm id to binary-encoded chemical structures.

Thanks for your reply.
I am currently doing data mining on FAERS, I have some problems, Can I ask you some questions? This is my mail: [email protected]. If you are willing to help me, please send me your contact information, thank you very much.

from lp-sda.

ruoqi-liu avatar ruoqi-liu commented on September 24, 2024

As shown in mapping.py, we use three pickle files which are located in "pickles/":

sider_eval_pairs = pickle.load(open('pickles/sider_eval_pairs_final.pkl', 'rb'))
drugid2rxnorm = pickle.load(open('pickles/drugid2rxnorm_mapping.pkl', 'rb'))
rxnorm2features = pickle.load(open('pickles/rxnorm2features_mapping.pkl', 'rb'))
* "sider_eval_pairs" contains the ground truth evaluation pairs obtained from SIDER

* "drugid2rxnorm" contains the ID mapping from the drug's id in FAERS to Rxnorm id

* "rxnorm2features" contains the ID mapping from Rxnorm id to binary-encoded chemical structures.

Thanks for your reply.
I am currently doing data mining on FAERS, I have some problems, Can I ask you some questions? This is my mail: [email protected]. If you are willing to help me, please send me your contact information, thank you very much.

Here's my email: [email protected]. Feel free to email me if you have any questions related to this project.

from lp-sda.

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