Comments (17)
saramsey
commented on September 24, 2024
David,
For starters, what Neo4j instance are you using for your RT engine dev work?
Steve
…-----------------------------------------------------
Stephen Ramsey
Assistant Professor, Oregon State University
* School of Electrical Engineering and Computer Science
* Department of Biomedical Sciences
208A Dryden Hall
[email protected]<mailto:[email protected]>
http://lab.saramsey.org
On Apr 2, 2018, at 1:39 PM, David Koslicki <[email protected]<mailto:[email protected]>> wrote:
@saramsey<https://github.com/saramsey> It would be quite handy (especially for the new standardized KG) to have APOC installed. @finnagin<https://github.com/finnagin> got this to work for one instance (and noted a few workarounds that needed to be done with missing libraries). Can we get APOC on all neo4j instances from here on out?
This document seems relevant<https://github.com/RTXteam/RTX/blob/master/team-private/apoc_docker.md>.
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dkoslicki
commented on September 24, 2024
I'm using rtx.ncats.io, but was going to ping you about which one I should use for the new standardized KG (since I don't know if its location is going to be moving). It will be especially helpful on the new standardized KG so I can make a "meta graph" like the following:
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saramsey
commented on September 24, 2024
Which container on rtx.ncats.io?
-----------------------------------------------------
Stephen Ramsey
Assistant Professor, Oregon State University
* School of Electrical Engineering and Computer Science
* Department of Biomedical Sciences
208A Dryden Hall
[email protected]<mailto:[email protected]>
http://lab.saramsey.org
On Apr 2, 2018, at 2:28 PM, David Koslicki <[email protected]<mailto:[email protected]>> wrote:
I'm using rtx.ncats.io, but was going to ping you about which one I should use for the new standardized KG (since I don't know if its location is going to be moving). It will be especially helpful on the new standardized KG so I can make a "meta graph" like the following:
[metagraph2]<https://user-images.githubusercontent.com/6362936/38215557-199f339e-367d-11e8-8ceb-4cc4429105ff.png>
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dkoslicki
commented on September 24, 2024
Browser: http://rtx.ncats.io:7473/browser/
Bolt: bolt://rtx.ncats.io:7687
Database: rtx.ncats.io:7473/db/data
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saramsey
commented on September 24, 2024
@finnagin can you please install APOC in Neo4j in docker container "rtxsteve" on rtxdev.saramsey.org, BUT, PLEASE WAIT UNTIL APRIL 3 TO DO THIS. Thanks.
@dkoslicki the new KG will be periodically pushed to http://rtxdev.saramsey.org:7674 aka bolt://rtxdev.saramsey.org:7887. I have asked @finnagin to intsall APOC tomorrow (today I promised the Translator folks on the KG Standardization call that the Neo4j server would stay up so they can look at our new KG).
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finnagin
commented on September 24, 2024
@saramsey I can do that. Is 3.2.6 also the version of neo4j used on rtxsteve?
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saramsey
commented on September 24, 2024
IDK, please check using Neo4j web UI or by looking in /var/log/neo4j/neo4j.log
…-----------------------------------------------------
Stephen Ramsey
Assistant Professor, Oregon State University
* School of Electrical Engineering and Computer Science
* Department of Biomedical Sciences
208A Dryden Hall
[email protected]<mailto:[email protected]>
http://lab.saramsey.org
On Apr 2, 2018, at 4:29 PM, Finn Womack <[email protected]<mailto:[email protected]>> wrote:
@saramsey<https://github.com/saramsey> I can do that. Is 3.2.6 also the version of neo4j used on rtxsteve?
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finnagin
commented on September 24, 2024
@saramsey Apoc is running on rtxsteve now.
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saramsey
commented on September 24, 2024
@finnagin you mean container "rtxsteve" on instance "rtxdev.saramsey.org"?
(just trying to disambiguate because there is also an EC2 instance called "rtxsteve.saramsey.org")
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finnagin
commented on September 24, 2024
@saramsey Sorry, I forgot those were named the same thing. Apoc is running on the container "rtxsteve" on instance "rtxdev.saramsey.org".
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saramsey
commented on September 24, 2024
@finnagin I assume you have done some testing to make sure Neo4j is running properly after this latest config change, right?
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finnagin
commented on September 24, 2024
@saramsey I did though I'm not sure if there are any commands I should test other than a few apoc commands (to test if apoc is running correctly) , a few simple cypher queries to return nodes and relationships (to test if the graph broke somehow), and a :sysinfo query (to check if the correct number of nodes and relationships are there).
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saramsey
commented on September 24, 2024
that’s perfect, thank you
…-----------------------------------------------------
Stephen Ramsey
Assistant Professor, Oregon State University
* School of Electrical Engineering and Computer Science
* Department of Biomedical Sciences
208A Dryden Hall
[email protected]<mailto:[email protected]>
http://lab.saramsey.org
On Apr 4, 2018, at 12:47 PM, Finn Womack <[email protected]<mailto:[email protected]>> wrote:
@saramsey<https://github.com/saramsey> I did though I'm not sure if there are any commands I should test other than a few apoc commands (to test if apoc is running correctly) , a few simple cypher queries to return nodes and relationships (to test if the graph broke somehow), and a :sysinfo query (to check if the correct number of nodes and relationships are there).
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dkoslicki
commented on September 24, 2024
@saramsey @finnagin
Since apoc is now on rtxsteve / rtxdev.saramsey.org (and that's what I'll be using for the code base update to the standardized KG format), I'll go ahead and close this issue. Let's just remember to install APOC when we eventually drop the KG on rtx.ncats.io and put the standardized one in its place.
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dkoslicki
commented on September 24, 2024
Reopen since apoc is apparently not on rtx.ncats.io:
There is no procedure with the name `apoc.meta.graph` registered for this database instance. Please ensure you've spelled the procedure name correctly and that the procedure is properly deployed.
@finnagin and/or @saramsey, can we get APOC on rtx.ncats.io?
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finnagin
commented on September 24, 2024
@dkoslicki I just installed apoc on rtx.ncats.io and restarted neo4j so it should be running. I tried calling apoc.warmup.run() using the cypher-shell in the docker container and it worked.
So apoc is now installed in the following containers:
| container name | url | http port |
|---|---|---|
| rtxdev | rtxdev.saramsey.org | 7474 |
| rtxsteve | rtxdev.saramsey.org | 7674 |
| NCATS | rtx.ncats.io | 7473 |
Are there any other containers I am missing that I should install apoc on? If not I think we can close this issue again.
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dkoslicki
commented on September 24, 2024
Looks good to me! Closing the issue.
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