Identifiers to MeSH terms about rtx HOT 9 CLOSED

Fixed, do a git pull. Also it looks like adding “self” to the method broke the test. It’s a static method, so called like this: print(QueryEBIOLS.get_mesh_id_for_uberon_id("UBERON:0001162”))

set() — You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub<#22 (comment)>, or mute the thread<https://github.com/notifications/unsubscribe-auth/AFTe-9ks0jC0frcjoeujw0COK2ZWlHaKks5tguFUgaJpZM4S1znl>.

That is in fact what is in the EBI OLS database, for UBERON:0001162 [cid:[email protected].] ----------------------------------------------------- Stephen Ramsey Assistant Professor, Oregon State University * School of Electrical Engineering and Computer Science * Department of Biomedical Sciences 208A Dryden Hall [email protected]<mailto:[email protected]> http://lab.saramsey.org On Mar 21, 2018, at 5:15 PM, David Koslicki <[email protected]<mailto:[email protected]>> wrote: Ummm... I don't think that was the issue. In[223]: import QueryEBIOLS In[224]: print(QueryEBIOLS.get_mesh_id_for_uberon_id("UBERON:0001162")) Traceback (most recent call last): File "/home/dkoslicki/Desktop/RTX/VE3/lib/python3.5/site-packages/IPython/core/interactiveshell.py", line 2910, in run_code exec(code_obj, self.user_global_ns, self.user_ns) File "<ipython-input-224-d8034d4a5d80>", line 1, in <module> print(QueryEBIOLS.get_mesh_id_for_uberon_id("UBERON:0001162")) AttributeError: module 'QueryEBIOLS' has no attribute 'get_mesh_id_for_uberon_id' The issue was the fact that the MeSH ID is nonstandard. EBIOLS returns MESH:A03.492.766.163 instead of a MESH:DXXX. — You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub<#22 (comment)>, or mute the thread<https://github.com/notifications/unsubscribe-auth/AFTe-9K70V_hzgvUOuIp2rWJtrjoWZ-Pks5tgu0rgaJpZM4S1znl>.