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.dotfiles

The configuration for working environment

afm-particle-analysis

The particle analysis for Actomic Force Microscope images

ants

Advanced Normalization Tools (ANTs)

automated-particle-extractor

Automated particle extractor

axis-finder

The script to find axes of rotation of data of specimens scanned with x-ray.

ct-phantom-dataset

The phantom CT dataset represented as a composition of ellipsoids.

dataset-separator

Dataset separator

dfi-cuda

Implementation of DFI reconstruction algorithm for CUDA.

dfi-opencl

Implementation of DFI reconstruction algorithm for OpenCL(liboclfft).

dnn-vertebrate-analysis

eye-ext

fish-report-generator

The report generator

fish-shape-estimator

Fish shape estimator

grating-interferometry

MATLAB implementation of grating interferometry

gs-wrap

Python wrapper for Google Storage

guts-tracking

Guts tracking

image-classification-cnn

The image classification CNN

mason-nvim-lint

Extension to mason.nvim that makes it easier to use nvim-lint with mason.nvim

quanfima

Quanfima (Quantitative Analysis of Fibrous Materials)

ring-corr-circular

schedule-manager

The schedule of courses.

schedule-manager-soap

Implementation Schedule Manager for SOAP

slice-stacker

Converts a set of slices (formats supported by fabio and nibabel) to a raw stack.

tomo-splitter

The splitter of tomography data obtained on pco.dimax and Andor cameras.

ufo-core

GLib-based framework for GPU-based data processing

ufo-filters

Common plugin suite for the ufo-core processing framework

ufo-phase-retrieval

The implementation of phase retrieval algorithm

ufo-profiling

The set of scripts for processing of profiling data

volume-binarizator

Binarizes raw volumes

xrd-reader

Application for rapid overview of XRD data